genome.fa.s4493.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004493.1 Hibiscus syriacus cultivar Beakdansim tig00009905_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86187

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2066--2098	17	2.0	17	88	5	50	18	15	21	45	1.85
9311--9350	19	2.1	19	90	0	62	45	10	5	40	1.60
10645--10686	21	2.0	21	81	9	50	40	0	0	59	0.97
13223--13343	58	2.0	61	93	6	212	35	1	14	47	1.55
21381--21452	36	2.0	36	100	0	144	36	19	13	30	1.91
22466--22547	35	2.5	32	76	9	85	43	2	6	47	1.41
22544--22601	28	2.1	28	90	0	89	44	8	1	44	1.44
22915--22961	2	23.5	2	100	0	94	51	0	0	48	1.00
26718--26875	21	7.8	20	72	7	86	38	25	17	18	1.92
26842--27035	20	9.7	20	84	2	210	35	25	20	19	1.95
27416--27486	33	2.2	33	86	0	97	11	22	16	49	1.78
27566--27673	21	5.7	20	72	15	86	45	19	25	10	1.81
27564--27642	21	3.8	21	79	12	92	45	16	26	11	1.81
27565--27642	41	1.9	41	94	0	138	44	16	26	11	1.82
27640--27684	19	2.4	19	92	0	72	46	26	17	8	1.78
27680--27777	19	5.7	19	68	22	72	10	24	23	41	1.85
27702--27791	14	5.7	14	74	23	81	8	25	24	41	1.84
27685--27799	33	3.5	33	95	0	203	9	24	21	44	1.82
28983--29112	19	7.3	19	75	17	127	10	18	23	46	1.80
29000--29056	14	3.7	14	77	20	60	10	21	22	45	1.82
28983--29075	33	2.8	33	95	0	168	10	20	21	47	1.80
31039--31074	14	2.6	14	95	0	63	33	0	22	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31181--31278	19	5.4	19	84	13	143	45	17	22	14	1.84
31181--31297	53	2.2	53	98	1	227	44	17	23	13	1.85
33614--33638	12	2.1	12	100	0	50	0	28	0	72	0.86
33813--33859	24	2.0	24	87	8	69	38	21	14	25	1.92
34541--34790	20	12.5	20	84	3	261	19	18	24	37	1.94
34757--34876	21	5.8	21	81	3	93	21	18	23	36	1.95
34757--34876	42	2.9	42	74	16	106	21	18	23	36	1.95
35024--35051	14	2.0	14	100	0	56	28	28	0	42	1.56
37905--37989	37	2.3	37	81	0	98	40	14	12	32	1.84
38353--38410	13	4.2	13	79	16	55	25	1	3	68	1.14
38501--38541	21	2.0	21	85	0	55	43	4	0	51	1.23
38530--38568	19	2.0	21	85	10	55	17	10	0	71	1.12
42648--43184	183	2.9	183	96	0	986	27	21	21	30	1.98
44364--44480	36	3.1	36	67	4	90	27	19	15	37	1.92
44328--44497	72	2.3	76	85	8	219	27	18	13	40	1.88
44339--44534	72	2.7	72	82	8	177	26	17	15	40	1.89
44549--44603	15	3.7	15	87	4	76	29	25	10	34	1.90
44513--44902	105	3.7	105	91	1	590	29	21	12	36	1.91
44803--44873	36	2.0	36	91	0	115	23	23	16	35	1.95
45085--45707	105	6.0	105	92	2	941	33	26	17	21	1.96
46250--46329	37	2.2	37	81	0	97	43	16	8	31	1.78
46711--46827	14	9.4	12	69	20	55	30	2	1	64	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46711--46753	18	2.5	17	81	7	52	25	2	2	69	1.12
46695--46825	61	2.3	59	78	16	141	32	2	2	63	1.19
47306--47349	17	2.6	16	92	3	70	13	6	18	61	1.54
48583--48608	13	2.0	13	100	0	52	46	0	0	53	1.00
48478--48712	122	1.9	122	81	5	278	46	3	4	45	1.39
48678--48750	30	2.4	29	88	8	103	39	0	6	53	1.28
48831--48878	3	15.7	3	83	12	62	29	4	0	66	1.10
50074--50115	19	2.3	19	87	4	59	14	7	0	78	0.95
51809--51851	19	2.3	18	84	7	59	11	13	11	62	1.54
55248--56455	84	14.5	83	79	4	1233	30	23	20	25	1.98
55248--56449	333	3.6	333	96	0	2160	30	23	20	24	1.98
57073--57261	41	4.8	36	72	17	96	44	3	5	46	1.43
56998--57269	81	3.5	77	78	11	243	46	3	5	44	1.44
57240--57312	30	2.4	29	86	8	94	39	1	6	52	1.37
57393--57442	3	16.7	3	91	8	84	30	2	0	68	1.01
57387--57452	15	4.5	15	89	10	77	27	3	0	69	1.03
58638--58680	19	2.3	19	87	0	59	13	6	0	79	0.93
81099--81171	21	3.4	21	74	20	78	20	17	28	32	1.96
81100--81185	44	2.0	44	92	0	145	23	17	29	30	1.97

Tables:   1

The End!