genome.fa.s4494.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004494.1 Hibiscus syriacus cultivar Beakdansim tig00009909_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79668

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6230--6429	6	33.5	6	96	3	377	33	0	16	50	1.45
7369--7398	15	2.0	15	93	0	51	33	10	6	50	1.62
8819--8863	21	2.1	21	87	0	63	31	28	24	15	1.96
10258--10572	149	2.1	149	97	1	587	26	17	21	34	1.95
10540--10584	23	2.0	23	90	0	72	22	26	26	24	2.00
11633--11694	30	2.0	31	81	3	72	37	22	19	20	1.95
12375--12473	30	3.3	30	92	1	155	29	26	22	22	1.99
12375--12498	60	2.1	60	83	3	151	30	26	21	20	1.98
20521--20666	78	1.9	78	81	4	179	38	8	14	38	1.77
23242--23792	264	2.1	257	84	9	704	28	10	19	41	1.85
32460--32511	20	2.6	20	96	0	95	38	26	13	21	1.90
32567--32760	20	9.6	20	76	8	76	35	25	19	19	1.95
32563--32760	40	5.0	39	81	4	200	35	26	19	19	1.95
32567--32759	60	3.2	60	83	0	251	35	25	19	19	1.95
32905--32959	22	2.5	22	78	0	65	23	38	16	21	1.93
33141--33211	33	2.2	33	92	0	115	11	22	18	47	1.80
33332--33386	14	3.6	14	73	21	56	40	23	27	9	1.85
33332--33402	33	2.2	33	92	0	115	42	25	23	8	1.82
33420--33509	14	5.7	14	74	23	81	8	25	23	42	1.83
33403--33510	33	3.3	33	92	6	175	9	24	22	44	1.81
33398--33510	19	6.8	18	72	23	88	9	24	22	43	1.83
35214--35593	185	2.0	186	99	0	753	22	12	18	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35214--35593	93	4.1	93	99	0	753	22	12	18	46	1.83
35637--35765	19	7.3	19	75	17	125	45	28	17	8	1.77
35673--35765	33	2.8	32	91	4	150	46	27	18	7	1.76
35637--35765	52	2.5	52	74	14	140	45	28	17	8	1.77
35761--35895	19	7.6	19	75	16	128	11	19	23	45	1.82
35783--35839	14	3.7	14	77	20	60	10	21	22	45	1.82
35766--35858	33	2.8	33	95	0	168	10	20	21	47	1.80
37710--37782	38	1.9	38	97	0	137	28	1	16	53	1.51
37705--37769	19	3.4	19	64	8	51	24	1	15	58	1.46
37763--37798	13	2.6	14	82	8	56	33	0	22	44	1.53
37905--38005	19	5.6	19	83	14	142	43	17	23	14	1.87
38012--38341	33	9.5	33	77	16	212	14	20	18	46	1.83
38034--38341	19	17.4	19	78	17	351	14	20	18	47	1.83
38034--38313	52	5.2	52	90	6	338	14	21	17	47	1.83
40645--40669	12	2.1	12	100	0	50	0	28	0	72	0.86
40844--40890	24	2.0	24	87	8	69	38	21	14	25	1.92
41564--41932	20	18.5	20	86	4	458	20	18	26	34	1.96
48047--48134	41	2.2	41	91	2	142	26	39	14	19	1.90
50104--50156	15	3.6	15	84	5	81	47	7	13	32	1.70
50365--50534	89	1.9	87	82	9	209	45	0	4	50	1.21
50549--50616	22	3.1	21	71	26	52	48	1	1	48	1.19
50573--50634	26	2.4	26	79	12	74	51	1	0	46	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50603--50676	30	2.5	30	81	16	91	56	0	1	41	1.07
50593--50673	29	2.8	28	80	14	85	54	1	1	43	1.16
50650--50697	23	2.1	23	88	7	71	41	0	4	54	1.20
50687--50729	22	2.0	22	90	0	68	53	0	0	46	1.00
50643--50748	55	2.0	53	81	10	126	50	0	1	48	1.12
50952--51046	42	2.3	42	94	0	163	46	18	17	16	1.85
51489--51536	21	2.4	19	80	10	51	50	4	6	39	1.47
53089--53154	30	2.2	31	83	2	80	46	6	3	43	1.43
53480--53519	21	1.9	21	94	0	71	30	27	15	27	1.96
53643--53693	22	2.3	23	80	10	61	21	39	21	17	1.93
54034--54101	20	3.2	20	87	6	91	47	17	17	17	1.84
54065--54111	23	2.2	21	85	11	60	36	14	25	23	1.93
55741--55790	21	2.4	21	86	0	73	24	14	30	32	1.94
55807--55904	21	4.6	23	73	12	77	21	12	33	32	1.90
55868--55916	21	2.3	21	85	0	62	22	18	28	30	1.97
56198--56298	21	4.8	21	75	9	98	24	31	16	26	1.97
56198--56313	42	2.8	42	82	2	117	25	32	15	26	1.95
56246--56316	21	3.4	21	75	7	72	25	33	18	22	1.96
58204--58252	15	3.1	15	82	5	62	14	30	26	28	1.95
58204--58243	7	5.4	7	82	11	53	15	32	25	27	1.95
60744--60806	12	5.2	12	70	21	51	25	14	22	38	1.92
60732--60843	24	4.7	24	87	6	147	25	15	19	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61026--61050	2	12.5	2	100	0	50	48	0	0	52	1.00
61991--62040	20	2.5	20	90	0	82	12	20	22	46	1.83
62004--62052	20	2.5	20	86	0	62	16	16	16	51	1.78
62150--62184	16	2.3	15	90	5	52	20	0	14	65	1.26
62231--62325	20	4.8	20	84	0	118	40	23	21	15	1.91
62343--62475	20	6.7	20	86	0	176	13	19	24	42	1.87
62343--62475	60	2.2	60	87	0	194	13	19	24	42	1.87
62780--62815	18	2.0	18	94	0	63	16	2	25	55	1.55
65079--65132	24	2.2	24	93	0	90	42	20	14	22	1.88
65079--65148	24	2.9	24	86	0	68	40	21	14	24	1.90
65884--65923	16	2.5	16	83	0	53	67	0	5	27	1.11
66176--66311	20	6.8	20	75	11	109	19	17	19	42	1.89
66176--66313	60	2.3	60	89	2	206	19	17	20	42	1.89

Tables:   1

The End!