Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004495.1 Hibiscus syriacus cultivar Beakdansim tig00009913_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78804

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7841--7995
64
2.4
65
78
10
167
34
20
18
26
1.95
8372--8452
29
2.8
29
90
3
128
45
17
20
16
1.85
15270--15350
29
2.8
29
92
3
137
45
16
20
17
1.85
17087--17161
36
2.1
36
88
9
111
42
14
2
40
1.60
31435--31478
2
22.0
2
80
0
52
47
2
2
47
1.27
33144--33195
25
2.1
24
85
3
68
46
11
0
42
1.40
34535--34573
18
2.2
17
86
4
51
48
2
5
43
1.38
34732--34782
23
2.2
23
86
6
68
23
1
1
72
1.05
38221--38257
15
2.5
15
100
0
74
21
27
5
45
1.73
39365--39625
37
6.9
36
81
11
213
43
3
4
47
1.43
39405--39652
73
3.2
73
84
10
286
45
3
4
45
1.42
39624--39714
30
3.0
30
89
9
139
46
5
6
41
1.53
39722--39761
12
3.3
12
92
0
62
37
5
10
47
1.59
39786--39813
8
3.5
8
100
0
56
10
0
0
89
0.49
39820--39852
2
16.5
2
100
0
66
48
0
0
51
1.00
41555--41586
16
1.9
17
93
6
57
18
0
0
81
0.70
41550--41621
26
2.7
27
75
12
76
18
5
1
75
1.07
41763--41789
12
2.2
12
100
0
54
37
7
0
55
1.28
44242--44291
21
2.4
21
75
0
55
52
24
24
0
1.48
44687--44947
43
6.2
41
73
9
134
34
22
18
23
1.96
44706--44876
43
4.0
41
80
7
164
36
22
19
21
1.95
44698--44888
85
2.2
86
82
6
219
37
22
18
20
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45336--45391
28
2.0
28
100
0
112
46
25
7
21
1.76
46740--46801
30
2.1
30
84
0
79
20
32
14
32
1.93
57569--57636
23
3.0
23
86
0
100
17
26
26
29
1.98
57964--57993
2
15.0
2
100
0
60
50
0
0
50
1.00
63017--63085
23
3.0
23
82
0
93
18
26
24
30
1.98
71898--71964
33
2.0
33
94
0
116
20
13
16
49
1.79

Tables:   1

The End!