Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004496.1 Hibiscus syriacus cultivar Beakdansim tig00009914_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116290

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7338--7376
20
2.0
20
84
0
51
56
5
2
35
1.35
8910--9192
85
3.3
85
92
1
426
30
20
17
31
1.95
9260--9304
2
22.5
2
100
0
90
48
0
0
51
1.00
13881--13921
21
1.9
22
85
5
57
29
4
58
7
1.46
15698--15756
3
20.0
3
83
10
77
33
1
0
64
1.04
18056--18105
25
2.0
24
85
11
66
50
10
2
38
1.48
33808--33956
61
2.4
61
93
2
253
21
18
25
34
1.96
33877--33992
42
2.8
42
94
0
205
20
18
25
35
1.96
33838--33977
21
6.7
23
73
14
101
21
18
23
36
1.95
34371--34398
11
2.5
11
100
0
56
28
0
28
42
1.56
43753--43786
3
11.3
3
100
0
68
32
0
0
67
0.91
46700--46726
2
13.5
2
100
0
54
51
0
0
48
1.00
47934--47962
10
2.9
10
100
0
58
20
0
0
79
0.74
58251--59342
105
10.4
105
94
0
1864
32
25
18
23
1.97
61071--61117
2
23.5
2
100
0
94
51
0
0
48
1.00
64383--64846
232
2.0
232
99
0
910
39
6
8
45
1.60
64859--64916
10
5.6
10
84
8
71
68
3
5
22
1.24
64859--64916
21
2.8
20
82
7
71
68
3
5
22
1.24
66453--66523
19
3.7
19
90
7
117
21
33
15
29
1.94
74717--74804
21
4.2
21
97
0
167
29
10
26
34
1.89
74821--74863
22
2.0
22
85
0
59
23
25
25
25
2.00
80637--80799
30
5.4
30
98
0
308
31
23
20
23
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80773--80866
31
3.1
30
75
4
89
30
23
18
27
1.97
80637--80824
90
2.1
91
91
1
306
32
24
19
22
1.97
81051--81075
4
6.2
4
100
0
50
48
24
0
28
1.52
81984--82026
21
2.0
21
81
0
50
18
25
27
27
1.98
82801--82907
21
5.1
21
96
0
196
28
9
27
34
1.88
92547--92615
18
3.8
18
88
0
111
26
30
26
17
1.97
93254--93400
19
7.7
19
96
0
258
21
34
15
28
1.94
94611--94652
12
3.6
11
82
17
50
40
4
0
54
1.21
101655--101684
14
2.1
14
100
0
60
6
20
26
46
1.75
106383--106795
206
2.0
206
99
0
808
36
17
21
24
1.95
109340--109471
70
1.9
70
90
0
210
35
15
15
34
1.88
110330--110379
24
2.1
23
82
10
57
22
6
12
60
1.53

Tables:   1

The End!