Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004498.1 Hibiscus syriacus cultivar Beakdansim tig00009921_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58071

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3047--3170
18
6.9
18
89
0
178
26
32
21
19
1.97
7146--7253
18
6.0
18
87
0
135
27
32
21
18
1.97
11315--11395
18
4.5
18
87
0
117
29
29
19
20
1.97
12025--12058
14
2.4
14
95
0
59
38
20
8
32
1.84
13668--13701
13
2.4
15
90
9
54
67
2
8
20
1.31
16470--16525
19
3.3
19
68
31
63
26
3
3
66
1.25
16466--16566
30
3.3
30
95
1
175
27
2
2
66
1.21
24200--24447
130
1.9
130
94
0
433
35
14
12
36
1.85
24214--24478
130
2.0
129
82
4
318
39
12
13
34
1.83
24772--24834
28
2.3
27
78
8
63
46
1
3
49
1.27
24914--24946
17
1.9
17
88
11
50
63
6
3
27
1.32
25067--25109
21
2.0
21
100
0
86
39
0
13
46
1.44
25078--25163
35
2.5
35
84
0
100
37
1
20
40
1.61
28174--28226
19
2.7
19
82
2
61
37
13
15
33
1.86
37554--37938
181
2.1
184
90
5
622
42
2
8
46
1.48
38223--38325
36
2.9
36
92
2
163
31
5
12
50
1.64
41495--41577
30
2.8
30
78
5
80
60
25
9
4
1.48
51516--51638
63
2.0
63
95
1
221
29
4
8
57
1.48
51518--51617
32
3.2
31
68
24
84
27
5
8
60
1.46
54928--55680
197
3.8
196
79
6
792
31
16
13
37
1.88
55681--55720
15
2.7
15
88
0
53
37
7
17
37
1.78
55988--56047
11
5.5
11
74
21
63
46
10
8
35
1.67

Tables:   1

The End!