genome.fa.s4499.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004499.1 Hibiscus syriacus cultivar Beakdansim tig00009922_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94053

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12473--12528	24	2.3	24	78	6	60	50	0	1	48	1.11
14420--14482	13	4.9	12	76	18	56	55	1	1	41	1.19
15460--15531	37	1.9	37	81	10	85	47	5	1	45	1.34
22019--22079	30	2.0	32	83	6	81	49	3	1	45	1.28
26525--26554	2	15.0	2	100	0	60	50	0	0	50	1.00
39203--39392	99	1.9	99	92	0	317	42	16	23	16	1.88
48726--48786	5	11.4	5	75	16	52	73	3	1	21	1.06
48734--48788	23	2.4	24	81	9	69	72	1	1	23	1.04
48739--48788	18	2.7	18	81	6	64	72	2	2	24	1.06
48743--48803	18	3.6	16	79	18	54	67	3	1	27	1.16
48729--48803	23	3.3	23	70	20	57	68	4	1	26	1.16
48883--48923	19	2.2	19	86	0	55	60	2	0	36	1.10
49045--49098	2	29.0	2	82	14	71	51	0	0	48	1.00
49467--49505	20	2.0	20	84	0	51	5	35	41	17	1.72
50258--50293	18	2.0	18	88	0	54	47	8	8	36	1.64
50272--50332	32	1.9	32	93	0	104	49	11	11	27	1.73
52248--52282	15	2.4	14	86	9	52	40	11	5	42	1.65
57264--57362	34	3.0	33	79	7	103	29	3	6	61	1.35
60674--60743	20	3.3	21	78	8	61	75	7	14	2	1.12
61322--61384	29	2.2	29	100	0	126	28	33	14	23	1.94
61815--61850	18	2.0	18	88	0	54	19	8	30	41	1.81
62308--62587	36	8.0	36	80	7	317	26	19	13	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62364--62551	101	1.9	102	89	2	299	27	18	13	40	1.89
62465--62586	35	3.4	35	85	4	156	24	20	14	40	1.90
62334--62650	136	2.3	136	84	4	406	28	19	13	39	1.89
62562--62717	67	2.4	67	83	4	192	32	21	8	36	1.85
62867--62933	29	2.3	29	76	7	73	44	10	16	28	1.80
63318--64390	105	10.3	104	89	4	1540	33	26	18	22	1.96
63318--64390	205	5.2	205	92	2	1610	33	26	18	22	1.96
63318--64390	310	3.4	311	89	5	1551	33	26	18	22	1.96
65565--65597	18	1.9	18	88	11	52	24	9	0	66	1.20
68872--68913	21	2.0	21	100	0	84	47	9	19	23	1.78
75351--75380	15	2.0	15	100	0	60	46	20	6	26	1.75
76197--76235	20	2.0	20	84	0	51	56	5	2	35	1.35
77778--78075	85	3.5	85	90	1	447	29	20	17	32	1.96
78132--78174	2	21.5	2	100	0	86	48	0	0	51	1.00
82798--82838	21	1.9	22	85	5	57	29	4	58	7	1.46
84612--84674	3	21.0	3	81	12	76	34	1	0	63	1.04
86952--87001	25	2.0	24	85	11	66	50	10	2	38	1.48

Tables:   1

The End!