genome.fa.s450.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000450.1 Hibiscus syriacus cultivar Beakdansim tig00000825_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  183353

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10769--10835	31	2.2	31	81	5	82	44	1	40	13	1.53
11135--11197	29	2.1	31	82	11	78	63	4	1	30	1.24
11185--11237	26	2.0	26	82	7	63	62	5	0	32	1.19
11216--11249	13	2.5	13	90	4	50	76	0	0	23	0.79
11213--11265	19	2.8	19	83	11	72	69	0	0	30	0.88
11213--11276	18	3.4	19	83	10	78	65	0	0	34	0.93
12024--12059	2	18.0	2	100	0	72	50	0	0	50	1.00
12807--13128	54	5.9	54	86	6	434	27	18	22	32	1.97
12807--13128	109	3.0	109	88	3	470	27	18	22	32	1.97
12807--13128	163	2.0	164	88	1	486	27	18	22	32	1.97
13555--13623	22	3.4	20	75	13	70	23	30	17	28	1.97
13500--13685	95	2.0	95	89	4	286	25	24	17	32	1.97
13524--13706	95	1.9	95	84	4	237	27	22	17	32	1.97
19802--20101	54	5.5	54	89	4	449	27	19	21	31	1.97
20543--20618	22	3.8	20	73	13	66	25	32	14	27	1.94
20465--20666	95	2.1	95	89	1	307	26	26	15	31	1.96
45969--46002	7	5.0	7	89	3	52	14	23	0	61	1.33
45976--46004	14	2.1	14	100	0	58	17	20	0	62	1.33
49547--49621	8	10.0	8	80	11	72	78	0	13	8	0.95
49530--49634	27	3.7	27	79	14	104	77	0	15	7	0.99
49547--49634	27	3.0	32	85	13	109	79	0	13	6	0.92
49567--49634	9	7.2	9	75	21	68	83	0	11	4	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49567--49634	17	3.8	17	83	14	75	83	0	11	4	0.78
49550--49634	8	10.8	8	74	14	52	80	0	14	5	0.90
50543--51338	105	7.6	105	95	0	1351	36	18	22	21	1.95
53201--53275	37	2.0	37	97	0	141	58	1	5	34	1.29
56419--56476	31	1.9	30	82	3	71	43	10	0	46	1.38
56509--56653	29	5.1	29	81	8	163	36	8	0	54	1.36
56738--56879	54	2.6	53	93	3	239	52	0	6	40	1.27
56730--56935	77	2.6	77	90	6	304	52	0	7	39	1.33
56766--56904	23	5.6	23	82	15	161	51	0	7	40	1.34
56719--57153	30	15.2	30	72	14	196	51	1	7	39	1.40
57005--57154	59	2.5	61	80	7	191	53	2	8	36	1.45
59957--60015	31	1.9	31	96	0	109	49	8	22	20	1.75
62915--63191	43	6.4	43	79	10	230	27	17	24	29	1.97
63128--63223	42	2.2	44	78	7	108	26	20	23	29	1.99
63591--63647	21	2.7	21	100	0	114	0	36	22	40	1.55
63591--63673	42	2.0	42	85	0	112	1	37	20	40	1.60
63655--63710	21	2.7	21	88	0	94	0	42	19	37	1.52
70027--70336	40	7.8	40	82	6	344	39	14	15	30	1.87
70027--70334	79	3.9	79	82	5	354	38	14	15	30	1.88
71635--71759	60	2.1	59	88	2	187	24	20	13	41	1.88
73352--73539	57	3.3	57	99	0	367	51	13	5	29	1.64
74465--74572	41	2.6	40	77	18	105	25	21	19	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75845--76006	64	2.5	65	84	3	202	34	19	20	25	1.96
76684--76747	30	2.1	30	85	0	83	18	18	28	34	1.95
83737--83785	2	24.5	2	100	0	98	51	0	0	48	1.00
83800--84101	37	8.1	36	82	11	344	44	4	5	45	1.48
83813--84101	75	3.9	71	85	10	343	44	4	5	45	1.46
84165--84216	10	4.9	10	77	13	50	23	1	0	75	0.91
86235--86323	46	1.9	47	97	2	171	25	20	19	34	1.96
89668--89798	67	2.0	67	85	0	181	35	22	19	22	1.96
93716--93775	29	2.1	29	100	0	120	20	23	25	31	1.98
94314--94372	20	2.9	21	80	9	77	32	16	25	25	1.97
94409--94471	21	3.0	22	84	11	78	33	17	26	22	1.96
94787--94953	59	2.9	58	82	3	210	32	12	19	34	1.90
95336--95519	68	2.7	68	93	1	307	32	14	22	29	1.94
95469--95761	81	3.6	81	90	0	462	35	12	24	28	1.91
95843--95897	2	27.5	2	100	0	110	50	0	0	49	1.00
96810--96850	21	1.9	21	85	5	55	53	12	12	21	1.70
109699--109787	40	2.2	40	79	0	97	30	20	14	34	1.92
124410--124437	10	2.8	10	100	0	56	21	32	0	46	1.52
124491--124578	40	2.2	40	85	0	113	30	20	13	35	1.91
124858--124884	12	2.2	12	100	0	54	22	7	0	70	1.12
124914--125238	83	3.9	83	95	0	589	39	19	12	28	1.88
126839--126899	23	2.7	22	82	7	61	36	1	9	52	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126809--126920	52	2.1	53	82	9	131	36	1	8	52	1.43
126789--126917	7	15.4	8	67	22	61	37	3	10	49	1.52
126938--127013	15	5.2	14	73	20	59	43	9	1	46	1.44
126954--126998	19	2.4	19	84	0	54	42	8	0	48	1.34
127981--128025	18	2.5	18	82	7	56	24	4	2	68	1.19
132953--133015	20	2.9	21	79	9	65	15	25	34	23	1.95
136812--136849	20	1.9	20	89	10	60	34	10	0	55	1.34
143602--143992	85	4.9	75	75	17	238	34	19	17	28	1.95
143679--144145	85	5.6	85	87	3	631	34	20	18	26	1.96
143668--144145	164	2.8	167	86	3	656	34	20	18	26	1.96
144960--145062	36	3.0	35	75	12	97	35	1	9	52	1.46
145002--145054	18	2.9	18	75	8	54	39	3	9	47	1.54
145089--145177	2	47.0	2	70	14	55	46	10	0	43	1.37
145092--145137	19	2.4	18	82	10	56	43	6	0	50	1.28
153060--153113	20	2.7	20	80	8	65	24	12	25	37	1.91
162612--162644	13	2.5	13	100	0	66	15	18	30	36	1.91
167438--167485	11	4.3	11	94	2	69	22	4	0	72	1.01
167443--167486	11	4.0	11	96	0	79	20	6	0	72	1.07
167770--167838	31	2.3	30	87	5	95	33	23	8	34	1.85
176129--176385	132	1.9	132	96	0	469	25	21	22	29	1.99

Tables:   1

The End!