Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004500.1 Hibiscus syriacus cultivar Beakdansim tig00009928_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63110

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3380--3433
26
2.1
26
86
3
74
61
7
12
18
1.54
4445--4485
22
1.9
21
85
5
55
7
7
7
78
1.11
8825--8878
21
2.6
21
87
0
72
25
7
18
48
1.74
8975--9527
43
12.9
42
79
5
552
25
21
20
32
1.97
8974--9527
85
6.5
84
81
4
572
25
21
20
32
1.97
20086--20223
60
2.3
60
83
7
181
38
4
11
45
1.60
20104--20201
31
3.2
30
69
9
83
32
5
13
48
1.64
24683--24804
30
4.0
30
73
6
109
22
20
25
31
1.98
24775--25022
63
3.9
63
88
1
354
23
25
23
27
2.00
27016--27045
3
10.0
3
92
0
51
63
0
3
33
1.11
28454--28553
3
32.7
3
83
4
128
63
1
0
36
1.02
28685--29043
76
4.7
76
92
2
571
35
22
20
21
1.96
28687--29621
152
6.1
152
82
9
1174
35
21
20
22
1.96
28974--29088
45
2.5
45
91
4
176
34
21
21
21
1.97
29099--29201
47
2.2
47
100
0
206
29
20
26
24
1.99
28898--29277
123
3.1
123
94
2
685
33
21
22
22
1.97
29143--29621
76
6.3
76
95
1
845
35
21
21
22
1.96
29143--29621
227
2.1
228
96
0
897
35
21
21
22
1.96
29577--29652
31
2.5
31
95
0
134
38
21
15
25
1.92
29493--29728
107
2.2
107
95
1
422
36
21
19
23
1.95
29417--29804
183
2.1
183
96
0
708
35
21
19
23
1.96
29349--29880
259
2.1
259
95
0
967
36
20
19
23
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29266--29956
335
2.1
334
95
1
1237
36
20
19
23
1.95
29608--30055
76
5.9
76
97
0
833
36
20
19
23
1.95
32094--32263
74
2.3
76
84
3
220
30
20
15
33
1.94
33406--33631
114
2.0
114
94
0
398
31
21
15
31
1.94
35623--35676
14
3.7
15
79
20
62
0
11
5
83
0.80
35623--35673
26
2.0
26
84
7
68
0
9
5
84
0.78
35877--35902
2
13.0
2
100
0
52
50
0
0
50
1.00
41097--41127
3
10.3
3
92
0
53
61
0
3
35
1.12
42514--42628
3
37.7
3
87
5
160
63
0
0
35
1.01
46230--46278
13
3.6
13
73
10
53
42
4
2
51
1.32
47200--47235
17
2.1
17
90
10
56
50
33
2
13
1.57
47287--47358
34
2.1
34
94
0
126
23
30
12
33
1.92
48355--48417
21
3.0
21
69
2
56
34
14
14
36
1.86
50258--50313
24
2.4
24
78
3
60
25
21
23
30
1.99

Tables:   1

The End!