Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004502.1 Hibiscus syriacus cultivar Beakdansim tig00009930_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55373

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7895--7956
16
4.0
16
79
4
65
72
1
0
25
0.94
7895--7948
21
2.5
22
87
3
74
74
1
0
24
0.92
7900--7970
37
2.0
35
88
5
106
70
4
0
25
1.05
8726--8807
25
3.5
23
71
19
71
12
6
2
79
1.01
10754--11111
95
3.7
95
90
2
547
32
16
18
32
1.93
13541--13617
12
6.0
12
74
16
57
18
3
2
75
1.07
13540--13626
40
2.2
40
85
4
113
16
5
2
75
1.09
13538--13626
41
2.2
40
84
6
117
15
6
2
75
1.11
13552--13649
41
2.4
41
83
8
121
17
7
3
72
1.20
13596--13659
33
1.9
33
81
12
78
18
7
1
71
1.18
13764--13788
13
1.9
13
100
0
50
44
0
0
56
0.99
16478--16506
2
14.5
2
100
0
58
48
0
0
51
1.00
20384--20408
2
12.5
2
100
0
50
0
48
0
52
1.00
34142--34181
19
2.1
19
100
0
80
30
15
22
32
1.94
36283--37233
81
11.7
81
90
0
1404
28
24
11
35
1.91
37464--37629
55
3.0
54
86
4
217
31
20
12
35
1.89
40863--40938
3
25.7
3
92
7
129
67
0
0
32
0.91
41540--41696
65
2.4
65
89
4
228
27
22
19
30
1.98
41681--41734
19
2.8
19
100
0
108
22
33
22
22
1.97
42998--43070
32
2.3
33
81
9
80
53
1
6
38
1.36
44902--44943
21
2.0
21
85
0
57
47
7
0
45
1.30
44912--44956
21
2.1
21
88
8
65
44
4
0
51
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46994--47038
23
2.0
23
86
0
63
53
6
6
33
1.53
49037--49276
96
2.4
95
80
10
252
41
5
28
24
1.77
49283--49504
103
2.2
102
83
5
279
34
6
24
35
1.81
49884--49918
17
1.9
17
88
11
52
37
2
2
57
1.29
50004--50040
14
2.6
14
100
0
74
27
0
0
72
0.84
50059--50185
31
4.0
30
82
13
123
40
20
5
33
1.75
50125--50188
19
3.5
19
80
8
87
42
20
3
34
1.68
50253--50327
22
2.9
28
77
18
90
49
17
4
29
1.65
50341--50681
7
49.0
7
65
22
62
42
2
5
48
1.40
50351--50565
9
25.4
9
67
20
67
44
2
6
46
1.42
50344--50418
13
6.6
12
73
22
56
42
0
6
50
1.28
50346--50418
15
5.4
14
73
15
64
42
0
6
50
1.29
50344--50586
2
120.5
2
65
23
84
44
2
5
46
1.40
50614--50668
25
2.2
25
77
6
58
38
5
3
52
1.42

Tables:   1

The End!