Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004503.1 Hibiscus syriacus cultivar Beakdansim tig00009931_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68523

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1108--1169
3
20.7
3
80
6
72
66
0
0
33
0.92
1120--1167
22
2.3
20
85
7
60
70
0
0
29
0.87
3353--3411
29
2.0
30
96
3
111
40
13
6
38
1.71
8782--8818
18
2.1
18
100
0
74
51
16
5
27
1.66
9735--9768
14
2.4
14
100
0
68
0
20
50
29
1.49
15032--15064
2
17.0
2
93
6
59
48
0
51
0
1.00
21327--21362
2
18.0
2
100
0
72
50
0
0
50
1.00
21841--21982
74
1.9
74
95
2
259
27
12
13
46
1.79
23558--23691
23
5.4
25
71
17
77
39
2
11
46
1.53
23575--23606
16
2.0
16
100
0
64
37
0
18
43
1.51
23692--23745
24
2.2
24
87
6
74
51
3
3
40
1.37
23704--23749
13
3.7
13
82
11
60
47
4
2
45
1.34
23704--23751
24
2.0
24
91
0
78
47
4
2
45
1.33
24290--24362
7
10.6
7
82
2
67
39
36
4
19
1.71
24292--24332
13
3.1
13
92
3
64
43
34
0
21
1.53
27651--27704
22
2.5
22
81
0
63
24
38
29
7
1.82
27667--27744
31
2.5
31
77
8
77
25
33
30
10
1.89
29319--29403
32
2.7
33
80
10
99
12
27
28
31
1.93
31209--31267
31
1.9
31
85
0
82
42
5
8
44
1.57
31294--31342
22
2.2
22
85
3
62
53
14
2
30
1.52
31282--32036
54
13.8
54
78
10
739
52
12
0
34
1.40
31314--32021
32
25.5
31
69
26
419
52
12
0
33
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31462--31504
22
2.0
22
95
0
77
51
11
0
37
1.39
31464--31512
22
2.2
22
85
3
62
55
12
0
32
1.37
31484--31916
80
5.3
80
89
5
641
53
13
0
33
1.40
31314--31698
112
3.4
112
78
9
462
53
12
0
33
1.41
31484--32036
166
3.4
166
86
6
747
52
12
0
34
1.39
31430--32000
134
4.2
134
77
11
420
53
12
0
34
1.39
31684--31732
22
2.2
22
85
3
62
57
12
0
30
1.36
31738--31812
22
3.2
23
79
11
89
54
16
0
29
1.42
31818--31892
22
3.2
23
75
17
82
54
17
0
28
1.43
31896--31938
22
2.0
22
95
0
77
51
11
0
37
1.39
31898--31946
22
2.2
22
85
3
62
55
12
0
32
1.37
31950--31992
22
2.0
22
95
0
77
51
11
0
37
1.39
31952--32000
22
2.2
22
85
3
62
55
12
0
32
1.37
31995--32158
15
10.5
15
85
8
220
50
1
0
47
1.11
33814--33862
7
7.0
7
97
0
89
44
0
55
0
0.99
48034--48066
17
2.0
17
88
5
50
18
15
21
45
1.85
55316--55355
19
2.1
19
90
0
62
45
10
5
40
1.60
56645--56687
21
2.0
21
82
13
52
39
0
0
60
0.97
59223--59345
60
2.0
62
96
3
232
35
1
14
47
1.54
67298--67368
36
2.0
36
97
2
135
35
19
14
30
1.91
67408--67447
20
2.0
20
85
0
53
37
15
17
30
1.90
68430--68481
25
2.1
25
88
0
77
50
9
1
38
1.46

Tables:   1

The End!