Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004505.1 Hibiscus syriacus cultivar Beakdansim tig00009939_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85080

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2789--2839
19
2.7
19
96
0
93
29
25
21
23
1.99
2930--3000
20
3.5
20
83
7
90
30
21
21
26
1.98
5474--5528
3
18.7
3
83
3
67
58
1
0
40
1.09
5477--5530
9
6.1
9
86
4
74
55
1
0
42
1.10
5844--6051
108
1.9
111
94
3
368
26
21
20
31
1.98
6616--6689
14
5.2
15
81
15
95
6
12
0
81
0.88
6646--6680
18
1.9
18
100
0
70
5
8
0
85
0.73
6623--6689
27
2.4
28
83
16
95
7
10
0
82
0.85
6616--6704
15
5.7
15
79
18
76
6
11
1
80
0.94
16113--16158
23
2.0
23
95
0
83
36
8
19
34
1.83
16555--16690
73
1.9
72
85
10
188
27
22
17
33
1.96
16552--16703
73
2.1
72
82
10
186
28
21
17
31
1.96
22261--22289
2
14.5
2
100
0
58
48
0
0
51
1.00
22616--22680
31
2.1
31
85
5
87
35
20
20
24
1.96
26542--26607
33
2.0
33
93
0
114
22
46
0
30
1.52
26641--26684
21
2.1
21
91
0
70
15
31
11
40
1.83
27057--27116
20
2.8
22
76
23
65
46
6
0
46
1.29
28908--28954
20
2.4
19
82
10
67
19
17
10
53
1.72
29320--29344
11
2.3
11
100
0
50
36
24
8
32
1.84
41162--41199
17
2.2
17
90
4
58
50
0
13
36
1.42
44685--44727
22
1.9
23
85
4
61
51
0
11
37
1.39
45224--45291
23
2.9
24
76
4
59
25
11
16
47
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45756--45803
2
24.0
2
100
0
96
50
0
0
50
1.00
57338--57388
16
3.1
16
75
10
57
39
17
21
21
1.93
57537--57562
11
2.4
11
100
0
52
38
15
0
46
1.46
60718--60748
7
4.4
7
95
0
53
35
16
12
35
1.87
67482--67530
24
2.0
24
100
0
98
42
4
4
48
1.40
68895--69236
170
2.0
170
100
0
684
37
9
14
38
1.80
83248--83325
28
2.7
28
76
11
77
28
16
3
51
1.62
83477--83610
20
6.7
20
71
8
85
38
26
16
19
1.92
83597--83825
20
11.5
20
83
4
212
37
24
17
20
1.94

Tables:   1

The End!