Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000451.1 Hibiscus syriacus cultivar Beakdansim tig00000835_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55123

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2596--2661
2
34.0
2
90
6
109
51
0
1
46
1.10
2596--2661
25
2.6
25
97
0
123
51
0
1
46
1.10
2596--2661
23
2.8
24
93
4
109
51
0
1
46
1.10
3376--3439
23
2.8
23
97
0
119
20
21
28
29
1.98
7514--7567
22
2.5
22
85
8
74
70
7
0
22
1.12
18458--18505
18
2.6
19
80
9
55
47
0
0
52
1.00
19856--19901
14
3.3
14
90
0
74
8
13
26
52
1.69
20631--20705
10
7.7
10
69
21
61
9
12
21
57
1.62
20637--20701
16
4.1
16
95
0
121
7
12
23
56
1.61
20770--20818
16
3.1
16
100
0
98
6
12
24
57
1.58
21203--21288
30
2.9
30
81
8
104
18
10
8
62
1.51
26788--26820
9
3.7
9
84
15
50
9
0
9
81
0.87
26776--26820
18
2.3
20
92
7
76
11
2
8
77
1.07
27582--27641
30
2.0
30
93
0
102
30
5
21
43
1.74
27724--27925
8
25.8
8
65
22
54
24
32
17
25
1.97
27722--27779
21
2.8
21
94
0
107
20
34
18
25
1.96
27842--27918
21
3.7
21
96
1
138
19
35
18
27
1.95
28290--28359
34
2.1
32
84
5
86
31
15
28
24
1.96
29207--29254
19
2.5
20
82
3
62
52
6
12
29
1.63
30531--30590
30
2.0
30
93
0
102
30
5
21
43
1.74
30673--30874
8
25.8
8
65
22
54
24
32
17
26
1.97
30671--30728
21
2.8
21
94
0
107
20
34
18
25
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30791--30867
21
3.7
21
96
1
138
19
35
16
28
1.94
40167--40226
16
3.6
16
78
12
75
60
3
11
25
1.47
40156--40239
35
2.4
35
91
0
150
55
4
13
26
1.57
40180--40239
16
3.2
20
68
22
58
58
5
11
25
1.53
40183--40239
19
3.2
19
70
14
57
59
3
12
24
1.48
48780--48969
106
1.8
105
90
3
310
40
18
14
25
1.89
50801--50836
11
3.3
11
92
0
54
52
11
5
30
1.59
54698--54774
29
2.6
28
78
8
82
35
23
7
33
1.84
54667--54749
29
2.8
30
75
8
82
38
21
8
31
1.83

Tables:   1

The End!