Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004512.1 Hibiscus syriacus cultivar Beakdansim tig00009951_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52172

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5106--5325
55
4.0
55
85
5
259
36
12
20
30
1.89
5126--5325
109
1.8
109
84
4
278
37
12
18
32
1.88
5474--6124
81
8.0
81
90
0
953
35
11
21
31
1.89
5474--6069
323
1.8
323
91
0
985
35
11
21
31
1.90
5496--6148
323
2.0
323
87
2
927
35
11
21
31
1.89
23551--23600
17
2.8
19
79
14
61
2
16
2
80
0.91
25213--25260
23
2.0
25
88
8
73
47
8
6
37
1.59
28351--28769
81
5.2
81
91
0
660
37
10
21
30
1.87
34043--34085
19
2.4
18
82
17
54
62
0
4
32
1.15
35354--35505
55
2.8
55
88
1
225
36
12
18
32
1.88
35355--35551
109
1.8
109
83
4
263
38
11
17
32
1.85
35706--37003
81
16.1
81
87
2
1797
34
11
21
32
1.89
39553--39709
43
3.7
42
78
5
136
38
17
14
29
1.89
39737--40085
122
2.9
117
82
6
423
26
19
15
39
1.91
39997--41035
138
7.5
139
88
2
1488
26
21
17
34
1.95
42972--43046
21
3.6
21
77
15
75
0
21
1
77
0.85
42993--43056
17
3.6
18
78
18
71
0
17
0
82
0.66
42997--43050
11
4.9
11
86
6
74
0
16
0
83
0.65
42984--43055
23
3.2
24
77
20
84
0
19
0
80
0.71
45520--45569
20
2.5
20
80
6
57
64
8
12
16
1.49
45562--45597
14
2.6
14
86
0
54
38
11
30
19
1.86

Tables:   1

The End!