Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004513.1 Hibiscus syriacus cultivar Beakdansim tig00009952_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 74024
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Found at i:42 original size:20 final size:21
Alignment explanation
Indices: 17--68 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
7 ATGATGACTA
17 TGGCTTTGTAATAGA-GTGTT
1 TGGCTTTGTAATAGAGGTGTT
37 TGGCTTTGTAATAGAGGTGTT
1 TGGCTTTGTAATAGAGGTGTT
58 TGGCTTTGTAA
1 TGGCTTTGTAA
69 AAATACCTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 15 0.48
21 16 0.52
ACGTcount: A:0.19, C:0.06, G:0.31, T:0.44
Consensus pattern (21 bp):
TGGCTTTGTAATAGAGGTGTT
Found at i:2031 original size:25 final size:25
Alignment explanation
Indices: 1997--2056 Score: 102
Period size: 25 Copynumber: 2.4 Consensus size: 25
1987 ACAACTTTGA
1997 AGTTCTTCCAAGATAATTCTAAGGG
1 AGTTCTTCCAAGATAATTCTAAGGG
* *
2022 AGTTTTTCCAAGATGATTCTAAGGG
1 AGTTCTTCCAAGATAATTCTAAGGG
2047 AGTTCTTCCA
1 AGTTCTTCCA
2057 TATTTTATTA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (25 bp):
AGTTCTTCCAAGATAATTCTAAGGG
Found at i:9256 original size:20 final size:20
Alignment explanation
Indices: 9233--9278 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
9223 AAATTTTGGC
*
9233 TTTTTTGGCTTTTTTTTTGT
1 TTTTTTGCCTTTTTTTTTGT
9253 TTTTTTGCCTTTTTTTTTGT
1 TTTTTTGCCTTTTTTTTTGT
9273 TTTTTT
1 TTTTTT
9279 TTTTTGAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.00, C:0.07, G:0.11, T:0.83
Consensus pattern (20 bp):
TTTTTTGCCTTTTTTTTTGT
Found at i:9275 original size:10 final size:10
Alignment explanation
Indices: 9242--9280 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
9232 CTTTTTTGGC
9242 TTTTTTTTTG
1 TTTTTTTTTG
***
9252 TTTTTTTGCC
1 TTTTTTTTTG
9262 TTTTTTTTTG
1 TTTTTTTTTG
9272 TTTTTTTTT
1 TTTTTTTTT
9281 TTTGAAAACA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.00, C:0.05, G:0.08, T:0.87
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:13201 original size:27 final size:26
Alignment explanation
Indices: 13150--13201 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
13140 GCATGATATG
* *
13150 TAATATAATAGTATATATTATAAGGT
1 TAATATAATAGTAAATATTAAAAGGT
13176 TAATATAA-AGTAAATGCATTAAAAGG
1 TAATATAATAGTAAAT--ATTAAAAGG
13202 ATGTTCAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 6 0.27
26 8 0.36
27 8 0.36
ACGTcount: A:0.50, C:0.02, G:0.13, T:0.35
Consensus pattern (26 bp):
TAATATAATAGTAAATATTAAAAGGT
Found at i:16276 original size:19 final size:20
Alignment explanation
Indices: 16254--16295 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
16244 GCATGTTTCC
16254 TCATT-AAAATCATGTATTT
1 TCATTAAAAATCATGTATTT
16273 TCATTAAAAATCATGTATTT
1 TCATTAAAAATCATGTATTT
16293 TCA
1 TCA
16296 AAGGGGTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.38, C:0.12, G:0.05, T:0.45
Consensus pattern (20 bp):
TCATTAAAAATCATGTATTT
Found at i:16854 original size:12 final size:12
Alignment explanation
Indices: 16837--16861 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
16827 TTATCATTTC
16837 ATTTCTTTCATT
1 ATTTCTTTCATT
16849 ATTTCTTTCATT
1 ATTTCTTTCATT
16861 A
1 A
16862 ATACATCTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.16, G:0.00, T:0.64
Consensus pattern (12 bp):
ATTTCTTTCATT
Found at i:17360 original size:17 final size:17
Alignment explanation
Indices: 17340--17375 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
17330 TCCTACCTTT
*
17340 TACCATATCCATTTCTA
1 TACCATAACCATTTCTA
*
17357 TACCCTAACCATTTCTA
1 TACCATAACCATTTCTA
17374 TA
1 TA
17376 GCCAACGCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.31, G:0.00, T:0.39
Consensus pattern (17 bp):
TACCATAACCATTTCTA
Found at i:19863 original size:21 final size:21
Alignment explanation
Indices: 19834--19887 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
19824 CTCATTATAA
* *
19834 TCATTTATTTTCGTTAAAAAC
1 TCATATATTTTCATTAAAAAC
19855 TCATATATTTTCATTAAAAA-
1 TCATATATTTTCATTAAAAAC
* *
19875 GCATGTATTTTCA
1 TCATATATTTTCA
19888 AAGGGGTTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 11 0.38
21 18 0.62
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.46
Consensus pattern (21 bp):
TCATATATTTTCATTAAAAAC
Found at i:20398 original size:12 final size:12
Alignment explanation
Indices: 20381--20405 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
20371 TAATCTATTC
20381 ATTTCTTTCATT
1 ATTTCTTTCATT
20393 ATTTCTTTCATT
1 ATTTCTTTCATT
20405 A
1 A
20406 ATCCATCTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.16, G:0.00, T:0.64
Consensus pattern (12 bp):
ATTTCTTTCATT
Found at i:20657 original size:11 final size:11
Alignment explanation
Indices: 20641--20690 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
20631 TGTAGTGCAA
20641 AAAAAAGAAAG
1 AAAAAAGAAAG
20652 AAAAAAAGAAA-
1 -AAAAAAGAAAG
20663 AATAAAAGCAAAG
1 AA-AAAAG-AAAG
*
20676 -AAAAAGAGAG
1 AAAAAAGAAAG
20686 AAAAA
1 AAAAA
20691 GTTGCAAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
10 5 0.15
11 14 0.42
12 14 0.42
ACGTcount: A:0.80, C:0.02, G:0.16, T:0.02
Consensus pattern (11 bp):
AAAAAAGAAAG
Found at i:20657 original size:12 final size:12
Alignment explanation
Indices: 20640--20680 Score: 57
Period size: 12 Copynumber: 3.4 Consensus size: 12
20630 TTGTAGTGCA
20640 AAAAAAAGAAAG
1 AAAAAAAGAAAG
20652 AAAAAAAGAAA-
1 AAAAAAAGAAAG
*
20663 AATAAAAGCAAAG
1 AAAAAAAG-AAAG
20676 AAAAA
1 AAAAA
20681 GAGAGAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 7 0.28
12 14 0.56
13 4 0.16
ACGTcount: A:0.83, C:0.02, G:0.12, T:0.02
Consensus pattern (12 bp):
AAAAAAAGAAAG
Found at i:20675 original size:24 final size:24
Alignment explanation
Indices: 20639--20690 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
20629 TTTGTAGTGC
20639 AAAAAAAAGAAAGAAAAA-A-AGA
1 AAAAAAAAGAAAGAAAAAGAGAGA
20661 AAAATAAAAGCAAAGAAAAAGAGAGA
1 AAAA-AAAAG-AAAGAAAAAGAGAGA
20687 AAAA
1 AAAA
20691 GTTGCAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
22 4 0.15
23 5 0.19
24 9 0.35
25 1 0.04
26 7 0.27
ACGTcount: A:0.81, C:0.02, G:0.15, T:0.02
Consensus pattern (24 bp):
AAAAAAAAGAAAGAAAAAGAGAGA
Found at i:26373 original size:24 final size:25
Alignment explanation
Indices: 26344--26393 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
26334 TAGATGTTTA
*
26344 TTTCATATGTTATA-ATATAGTTAT
1 TTTCATATATTATATATATAGTTAT
*
26368 TTTCATATATTATATCTATAGTTAT
1 TTTCATATATTATATATATAGTTAT
26393 T
1 T
26394 ATGATAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 13 0.57
25 10 0.43
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.56
Consensus pattern (25 bp):
TTTCATATATTATATATATAGTTAT
Found at i:27982 original size:8 final size:8
Alignment explanation
Indices: 27961--28010 Score: 55
Period size: 8 Copynumber: 5.9 Consensus size: 8
27951 TTGGAGTACA
27961 AAAAGAAAG
1 AAAAG-AAG
*
27970 AAAAGACG
1 AAAAGAAG
27978 AAAAGAAG
1 AAAAGAAG
*
27986 AAAAAAAAAG
1 --AAAAGAAG
27996 AAAAGAAG
1 AAAAGAAG
28004 AAAAGAA
1 AAAAGAA
28011 AAATAATAGA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
8 23 0.66
9 5 0.14
10 7 0.20
ACGTcount: A:0.78, C:0.02, G:0.20, T:0.00
Consensus pattern (8 bp):
AAAAGAAG
Found at i:27982 original size:13 final size:13
Alignment explanation
Indices: 27966--28012 Score: 60
Period size: 13 Copynumber: 3.6 Consensus size: 13
27956 GTACAAAAAG
*
27966 AAAGAAAAGACGA
1 AAAGAAAAGAAGA
*
27979 AAAGAAGAA-AAAA
1 AAAGAA-AAGAAGA
27992 AAAGAAAAGAAGA
1 AAAGAAAAGAAGA
28005 AAAGAAAA
1 AAAGAAAA
28013 ATAATAGAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
12 2 0.07
13 25 0.86
14 2 0.07
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (13 bp):
AAAGAAAAGAAGA
Found at i:27989 original size:26 final size:26
Alignment explanation
Indices: 27960--28010 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
27950 ATTGGAGTAC
* *
27960 AAAAAGAAAGAAAAGACGAAAAGAAG
1 AAAAAAAAAGAAAAGAAGAAAAGAAG
27986 AAAAAAAAAGAAAAGAAGAAAAGAA
1 AAAAAAAAAGAAAAGAAGAAAAGAA
28011 AAATAATAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.78, C:0.02, G:0.20, T:0.00
Consensus pattern (26 bp):
AAAAAAAAAGAAAAGAAGAAAAGAAG
Found at i:27991 original size:18 final size:18
Alignment explanation
Indices: 27963--28013 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 18
27953 GGAGTACAAA
*
27963 AAGAAAGAAAAGACGAAAAG
1 AAGAAA-AAAA-AAGAAAAG
27983 AAGAAAAAAAAAGAAAAG
1 AAGAAAAAAAAAGAAAAG
28001 AAGAAAAGAAAAA
1 AAGAAAA-AAAAA
28014 TAATAGAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 14 0.48
19 9 0.31
20 6 0.21
ACGTcount: A:0.78, C:0.02, G:0.20, T:0.00
Consensus pattern (18 bp):
AAGAAAAAAAAAGAAAAG
Found at i:30953 original size:24 final size:25
Alignment explanation
Indices: 30924--30973 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
30914 TAGATGCTTA
*
30924 TTTCATATGTTATA-ATATAGTTAT
1 TTTCATATATTATATATATAGTTAT
*
30948 TTTCATATATTATATCTATAGTTAT
1 TTTCATATATTATATATATAGTTAT
30973 T
1 T
30974 ATGATAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 13 0.57
25 10 0.43
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.56
Consensus pattern (25 bp):
TTTCATATATTATATATATAGTTAT
Found at i:42716 original size:15 final size:17
Alignment explanation
Indices: 42691--42724 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
42681 AATGTCATTT
42691 AGAACTTGGGA-TAAAA
1 AGAACTTGGGAGTAAAA
42707 AGAA-TTGGGAGTAAAA
1 AGAACTTGGGAGTAAAA
42723 AG
1 AG
42725 GCTTGAGCGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.50, C:0.03, G:0.29, T:0.18
Consensus pattern (17 bp):
AGAACTTGGGAGTAAAA
Found at i:43542 original size:35 final size:35
Alignment explanation
Indices: 43503--43577 Score: 116
Period size: 35 Copynumber: 2.1 Consensus size: 35
43493 GGAATTTGGC
**
43503 GATGATATAGGCGTGAT-ATGGTGATGGACTATGGT
1 GATGATATAGGCGTGATAATGGTGA-GGAAGATGGT
43538 GATGATATAGGCGTGATAATGGTGAGGAAGATGGT
1 GATGATATAGGCGTGATAATGGTGAGGAAGATGGT
43573 GATGA
1 GATGA
43578 ACAGATTGTA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
35 30 0.81
36 7 0.19
ACGTcount: A:0.29, C:0.04, G:0.39, T:0.28
Consensus pattern (35 bp):
GATGATATAGGCGTGATAATGGTGAGGAAGATGGT
Found at i:47534 original size:17 final size:17
Alignment explanation
Indices: 47512--47548 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
47502 TTTGCTTCAC
47512 TTTTTC-TTTTCTTTTGA
1 TTTTTCTTTTTCTTTT-A
47529 TTTTTCTTTTTCTTTTA
1 TTTTTCTTTTTCTTTTA
47546 TTT
1 TTT
47549 CTTTTGTACT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.05, C:0.11, G:0.03, T:0.81
Consensus pattern (17 bp):
TTTTTCTTTTTCTTTTA
Found at i:47622 original size:23 final size:20
Alignment explanation
Indices: 47579--47623 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 20
47569 TGTAGGAGTC
47579 TTTTTCTTTTCTTTTTGTTT
1 TTTTTCTTTTCTTTTTGTTT
47599 TTTTTCTTCTTTCTTTTTGCTTT
1 TTTTTC-T-TTTCTTTTTG-TTT
47622 TT
1 TT
47624 GTTGTAGCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 6 0.27
21 1 0.05
22 10 0.45
23 5 0.23
ACGTcount: A:0.00, C:0.13, G:0.04, T:0.82
Consensus pattern (20 bp):
TTTTTCTTTTCTTTTTGTTT
Found at i:48045 original size:35 final size:36
Alignment explanation
Indices: 48006--48085 Score: 135
Period size: 35 Copynumber: 2.2 Consensus size: 36
47996 AAATGGAATT
**
48006 TGGTGATGATATAGGCGTGAT-ATGGTGATGGACTA
1 TGGTGATGATATAGGCGTGATAATGGTGATGGAAGA
48041 TGGTGATGATATAGGCGTGATAATGGTGATGGAAGA
1 TGGTGATGATATAGGCGTGATAATGGTGATGGAAGA
48077 TGGTGATGA
1 TGGTGATGA
48086 ACAGATTGTA
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
35 21 0.50
36 21 0.50
ACGTcount: A:0.28, C:0.04, G:0.39, T:0.30
Consensus pattern (36 bp):
TGGTGATGATATAGGCGTGATAATGGTGATGGAAGA
Found at i:54305 original size:23 final size:24
Alignment explanation
Indices: 54279--54328 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
54269 ATCAGAAAAC
*
54279 AAATTGA-AGCACTCCAAAAGAAG
1 AAATTGACAGCACTCAAAAAGAAG
*
54302 AAATTTACAGCACTCAAAAAGAAG
1 AAATTGACAGCACTCAAAAAGAAG
54326 AAA
1 AAA
54329 AACAAAGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 6 0.25
24 18 0.75
ACGTcount: A:0.56, C:0.16, G:0.14, T:0.14
Consensus pattern (24 bp):
AAATTGACAGCACTCAAAAAGAAG
Found at i:57011 original size:13 final size:13
Alignment explanation
Indices: 56993--57018 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
56983 TCGATTCAGC
56993 TAGAGGAGCTTAA
1 TAGAGGAGCTTAA
57006 TAGAGGAGCTTAA
1 TAGAGGAGCTTAA
57019 GGCTAGGTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.31, T:0.23
Consensus pattern (13 bp):
TAGAGGAGCTTAA
Found at i:57453 original size:91 final size:91
Alignment explanation
Indices: 57278--57458 Score: 215
Period size: 91 Copynumber: 2.0 Consensus size: 91
57268 CCTAGAACAC
* *
57278 CCATGTGCCTTGCATATGACAAGCCCCCATGTGCCTTGCATGTGGATCATTTAGGCGCTAAGATG
1 CCATGTGCCTTGCATATGACAAGCCCCCATGTGCCTTGCATATGGATCATTTAGGCGCCAAGATG
***
57343 AAGAGTTTTCTCCCTATTCGGCCAAG
66 AAGAGCCATCTCCCTATTCGGCCAAG
** * * *
57369 CCATGTGTTTTGCATGTGATCAA-CCCCCATGTGCCTTGCATATGGTTCATTTAGGTGCCAAGAT
1 CCATGTGCCTTGCATATGA-CAAGCCCCCATGTGCCTTGCATATGGATCATTTAGGCGCCAAGAT
*
57433 GAATG-GCCATCTATCC-ATTCGGCCAA
65 GAA-GAGCCATCT-CCCTATTCGGCCAA
57459 TCACCATTAC
Statistics
Matches: 76, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
91 70 0.92
92 6 0.08
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (91 bp):
CCATGTGCCTTGCATATGACAAGCCCCCATGTGCCTTGCATATGGATCATTTAGGCGCCAAGATG
AAGAGCCATCTCCCTATTCGGCCAAG
Found at i:65150 original size:2 final size:2
Alignment explanation
Indices: 65143--65203 Score: 122
Period size: 2 Copynumber: 30.5 Consensus size: 2
65133 ATTTTACTTA
65143 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
65185 AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT A
65204 ATAACCAAGG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 59 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:65597 original size:20 final size:20
Alignment explanation
Indices: 65574--65611 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
65564 GGTTCGAAGT
*
65574 TTTTCTTTTATTTCTTTCTG
1 TTTTCTTATATTTCTTTCTG
*
65594 TTTTCTTATATTTTTTTC
1 TTTTCTTATATTTCTTTC
65612 AAAACTCTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.08, C:0.13, G:0.03, T:0.76
Consensus pattern (20 bp):
TTTTCTTATATTTCTTTCTG
Done.