Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004514.1 Hibiscus syriacus cultivar Beakdansim tig00009953_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 180164
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Found at i:8515 original size:22 final size:22
Alignment explanation
Indices: 8480--8542 Score: 63
Period size: 23 Copynumber: 2.8 Consensus size: 22
8470 TAGTGCAAGA
* *
8480 GGAATCGATACCCCCTTGAAGG
1 GGAACCGATTCCCCCTTGAAGG
* * *
8502 GGAACTGATTCCCCATTTGAATG
1 GGAACCGATTCCCC-CTTGAAGG
8525 GGAACCGATTCCCTCCTT
1 GGAACCGATTCCC-CCTT
8543 TAGAGAATTG
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
22 11 0.34
23 20 0.62
24 1 0.03
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (22 bp):
GGAACCGATTCCCCCTTGAAGG
Found at i:9178 original size:17 final size:17
Alignment explanation
Indices: 9156--9190 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
9146 AATTGCAGGT
* *
9156 TACATATCTTTTTTCGA
1 TACATATCCTTTTCCGA
9173 TACATATCCTTTTCCGA
1 TACATATCCTTTTCCGA
9190 T
1 T
9191 TTCTTAAACC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.23, C:0.23, G:0.06, T:0.49
Consensus pattern (17 bp):
TACATATCCTTTTCCGA
Found at i:10837 original size:29 final size:29
Alignment explanation
Indices: 10795--10853 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
10785 GAGAAGTGTT
*
10795 AGAGTAAGGGGGAGTAATTAATTTTCAAA
1 AGAGTAAAGGGGAGTAATTAATTTTCAAA
10824 AGAGTAAAGGGGAGTAATTAATTTTCAAA
1 AGAGTAAAGGGGAGTAATTAATTTTCAAA
10853 A
1 A
10854 ATGATTTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.44, C:0.03, G:0.25, T:0.27
Consensus pattern (29 bp):
AGAGTAAAGGGGAGTAATTAATTTTCAAA
Found at i:17051 original size:41 final size:41
Alignment explanation
Indices: 17006--17167 Score: 175
Period size: 41 Copynumber: 4.0 Consensus size: 41
16996 TTAATTCACA
*
17006 ATTCAATTCAATCATGACAACATGCAATAGTTCACCATTCG
1 ATTCAATTCAATCATGACAACATGCAATACTTCACCATTCG
* **
17047 ATTCAATTCAATCATGGCAACATGCAATACTTCACCATTAA
1 ATTCAATTCAATCATGACAACATGCAATACTTCACCATTCG
** * * * * *
17088 ACTT-AATTCGGTCAT-AGTAGCATACAATAGTTCGCCATTCG
1 A-TTCAATTCAATCATGA-CAACATGCAATACTTCACCATTCG
**
17129 ATTCAATTCAATCATGGTAACATGCAATACTTCACCATT
1 ATTCAATTCAATCATGACAACATGCAATACTTCACCATT
17168 AAACTTGATT
Statistics
Matches: 96, Mismatches: 21, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
40 2 0.02
41 92 0.96
42 2 0.02
ACGTcount: A:0.35, C:0.23, G:0.10, T:0.31
Consensus pattern (41 bp):
ATTCAATTCAATCATGACAACATGCAATACTTCACCATTCG
Found at i:17368 original size:41 final size:41
Alignment explanation
Indices: 17030--17356 Score: 388
Period size: 41 Copynumber: 8.0 Consensus size: 41
17020 TGACAACATG
* * * * * * *
17030 CAATAGTTCACCATTCGA-TTCAATTCAATCATGGCAACATG
1 CAATAATTCACCATTCAACTT-GATTCGATCATGGTAGCATA
* * * * *
17071 CAATACTTCACCATTAAACTTAATTCGGTCATAGTAGCATA
1 CAATAATTCACCATTCAACTTGATTCGATCATGGTAGCATA
* * * * * * *
17112 CAATAGTTCGCCATTCGA-TTCAATTCAATCATGGTAACATG
1 CAATAATTCACCATTCAACTT-GATTCGATCATGGTAGCATA
* *
17153 CAATACTTCACCATTAAACTTGATTCGATCATGGTAGCATA
1 CAATAATTCACCATTCAACTTGATTCGATCATGGTAGCATA
* * *
17194 CATTAATTCACCATTCAACTTGATTCAATCATGGTGGCATA
1 CAATAATTCACCATTCAACTTGATTCGATCATGGTAGCATA
*
17235 CAATAATTCACTATTCAACTTGATTCGATCATGGTAGCATA
1 CAATAATTCACCATTCAACTTGATTCGATCATGGTAGCATA
17276 CAATAATTCACCATTCAACTTGATTCGATCATGGTAGCATA
1 CAATAATTCACCATTCAACTTGATTCGATCATGGTAGCATA
*
17317 CAATAATTCACCATTCAACTTTATTCGATCATGGTAGCAT
1 CAATAATTCACCATTCAACTTGATTCGATCATGGTAGCAT
17357 GCATTTATTC
Statistics
Matches: 246, Mismatches: 37, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
40 2 0.01
41 240 0.98
42 4 0.02
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.32
Consensus pattern (41 bp):
CAATAATTCACCATTCAACTTGATTCGATCATGGTAGCATA
Found at i:21477 original size:39 final size:38
Alignment explanation
Indices: 21349--21481 Score: 122
Period size: 39 Copynumber: 3.4 Consensus size: 38
21339 TCTATGACTT
* * * * * *
21349 GTAAGACCTTACCTTAAGCTCCTCTGCTTCGTTCATAGG
1 GTAAGTCCTTACCGTAGGCTCCTCTGCTTTGTGCACA-G
* * * * *
21388 GTAAGTCCTTACTGAAGGCTCCTTTGTTTTATGCACAG
1 GTAAGTCCTTACCGTAGGCTCCTCTGCTTTGTGCACAG
*
21426 GATAAGCCCTTACCGTAGGCTCCTCTGCTTTGTGCACATG
1 G-TAAGTCCTTACCGTAGGCTCCTCTGCTTTGTGCACA-G
*
21466 GTAAGTTCTTACCGTA
1 GTAAGTCCTTACCGTA
21482 AGCCCTTATG
Statistics
Matches: 73, Mismatches: 19, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
38 2 0.03
39 69 0.95
40 2 0.03
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.34
Consensus pattern (38 bp):
GTAAGTCCTTACCGTAGGCTCCTCTGCTTTGTGCACAG
Found at i:22578 original size:151 final size:151
Alignment explanation
Indices: 22304--22580 Score: 382
Period size: 151 Copynumber: 1.8 Consensus size: 151
22294 GGTCATATTG
*
22304 AATATGAGTCCATATTGGTCCAAACTAAAATTGGGATCGATTTTAGTTTGAATAGAGTATGTTCG
1 AATATGAATCCATATTGGTCCAAACTAAAATTGGGATCGATTTTAGTTTGAATAGAGTATGTTCG
* * * * *
22369 AGTTTCAGAACAAGTTTAGTTATTATAGTTGATTATATATCAAGTATTGAGTCAAATAAATTAAT
66 AATTTCAGAACAAGTTTAATTACTATAGTTGAGTATATATCAAATATTGAGTCAAATAAATTAAT
22434 TCAAGTAATCGAGTTCAGACC
131 TCAAGTAATCGAGTTCAGACC
* * *
22455 AATATGAATCTATATTGGTCC-AACTAAAATTTGGATCGATTTTAGTTTGAATCGAGTATGATTC
1 AATATGAATCCATATTGGTCCAAACTAAAATTGGGATCGATTTTAGTTTGAATAGAGTATG-TTC
* * *
22519 GAATCTT-A-AATCATGTTTAATTACTAT-GTTTGAGTCTATATTAAATATTGAGTCAAATAAAT
65 GAAT-TTCAGAA-CAAGTTTAATTACTATAG-TTGAGTATATATCAAATATTGAGTCAAATAAAT
22581 CATATATATA
Statistics
Matches: 110, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
150 40 0.36
151 68 0.62
152 2 0.02
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.38
Consensus pattern (151 bp):
AATATGAATCCATATTGGTCCAAACTAAAATTGGGATCGATTTTAGTTTGAATAGAGTATGTTCG
AATTTCAGAACAAGTTTAATTACTATAGTTGAGTATATATCAAATATTGAGTCAAATAAATTAAT
TCAAGTAATCGAGTTCAGACC
Found at i:22706 original size:181 final size:181
Alignment explanation
Indices: 22402--22763 Score: 582
Period size: 181 Copynumber: 2.0 Consensus size: 181
22392 TATAGTTGAT
* * *
22402 TATATATCAAGTATTGAGTCAAATAAATTAATTCAAGTAATCGAGTTCAGACCAATATGAATCTA
1 TATATATAAAGTATCGAGTCAAATAAATTAATTCAAGTAATCGAGTTCAAACCAATATGAATCTA
* *
22467 TATTGGTCCAACTAAAATTTGGATCGATTTTAGTTTGAATCGAGTATGATTCGAATCTTAAATCA
66 TATTAGTCCAACTAAAATTTGGATCAATTTTAGTTTGAATCGAGTATGATTCGAATCTTAAATCA
*
22532 TGTTTAATTACTATGTTTGAGTCTATATTAAATATTGAGTCAAATAAATCA
131 AGTTTAATTACTATGTTTGAGTCTATATTAAATATTGAGTCAAATAAATCA
* * *
22583 TATATATAAAGTATCGGGTCAAATAAATTAATTTAAGTAATCGAGTTCAAACTAATATGAATCTA
1 TATATATAAAGTATCGAGTCAAATAAATTAATTCAAGTAATCGAGTTCAAACCAATATGAATCTA
* * *
22648 TATTAGTCCAACTAAAGTTTGGATCAATTTTAGTTTGAATCGA-TCATTATTTGAATCTTAAATC
66 TATTAGTCCAACTAAAATTTGGATCAATTTTAGTTTGAATCGAGT-ATGATTCGAATCTTAAATC
* *
22712 AAGTTTAATTATTATGTTTGAGTCTATATTAAATATTGTGTCAAATAAATCA
130 AAGTTTAATTACTATGTTTGAGTCTATATTAAATATTGAGTCAAATAAATCA
22764 ATTAAAGGAA
Statistics
Matches: 166, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
180 1 0.01
181 165 0.99
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.39
Consensus pattern (181 bp):
TATATATAAAGTATCGAGTCAAATAAATTAATTCAAGTAATCGAGTTCAAACCAATATGAATCTA
TATTAGTCCAACTAAAATTTGGATCAATTTTAGTTTGAATCGAGTATGATTCGAATCTTAAATCA
AGTTTAATTACTATGTTTGAGTCTATATTAAATATTGAGTCAAATAAATCA
Found at i:24857 original size:28 final size:29
Alignment explanation
Indices: 24817--24871 Score: 103
Period size: 28 Copynumber: 1.9 Consensus size: 29
24807 CCACGTCAAT
24817 ATTTTCTTTTGGTCAAGGC-AATAAAAAC
1 ATTTTCTTTTGGTCAAGGCAAATAAAAAC
24845 ATTTTCTTTTGGTCAAGGCAAATAAAA
1 ATTTTCTTTTGGTCAAGGCAAATAAAA
24872 CCCCATCGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
28 19 0.73
29 7 0.27
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (29 bp):
ATTTTCTTTTGGTCAAGGCAAATAAAAAC
Found at i:31326 original size:142 final size:142
Alignment explanation
Indices: 31070--31352 Score: 485
Period size: 142 Copynumber: 2.0 Consensus size: 142
31060 GTATAATTTA
31070 TTTCATGCTTAGCTAAATTTCCTTTTATCCAAAAGGCTTAACGATGACTCAATTCTATTGTGAGA
1 TTTCATGCTTAGCTAAATTTCCTTTTATCCAAAAGGCTTAACGATGACTCAATTCTATTGTGAGA
* * * *
31135 ATTGAAAAATACTTAACATATTCAGATGACATTCTTGATTTTCTGAAAACTTTATTTGGCAAACG
66 ATTGAAAAACACTTAACATATTCAGATGACATTCTTGATTTTATGAAAACTTGATTTGACAAACG
* *
31200 ACCATGTCTTTC
131 ACAATCTCTTTC
* *
31212 TTTCATGCTTAGCTAAATTTCCTTTTATCCAAAAGGCTTAACGATGACTCAATTTTGTTGTGAGA
1 TTTCATGCTTAGCTAAATTTCCTTTTATCCAAAAGGCTTAACGATGACTCAATTCTATTGTGAGA
*
31277 ATTGAAAAACACTTAACATATTTAGATGACATTCTTGATTTTATGAAAACTTGATTTGACAAACG
66 ATTGAAAAACACTTAACATATTCAGATGACATTCTTGATTTTATGAAAACTTGATTTGACAAACG
31342 ACAATCTCTTT
131 ACAATCTCTTT
31353 AGTAATCTTA
Statistics
Matches: 132, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
142 132 1.00
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.38
Consensus pattern (142 bp):
TTTCATGCTTAGCTAAATTTCCTTTTATCCAAAAGGCTTAACGATGACTCAATTCTATTGTGAGA
ATTGAAAAACACTTAACATATTCAGATGACATTCTTGATTTTATGAAAACTTGATTTGACAAACG
ACAATCTCTTTC
Found at i:32247 original size:55 final size:55
Alignment explanation
Indices: 32136--32458 Score: 452
Period size: 55 Copynumber: 5.9 Consensus size: 55
32126 CTATACGAAA
* * * * * **
32136 ATTCATCAACCCATGATGAGTTCCGTGG-GTTGCACATATAGTGCTTGTACATTG
1 ATTCATCAACCCATGATGAATTCCGTGGATTTGCACACAAAGTGCCTGTACGGTG
* * * * * * *
32190 ATTCATCAACTCATGATAAATTCCATGAATTTGTACACATAGTGCATGTACGGTG
1 ATTCATCAACCCATGATGAATTCCGTGGATTTGCACACAAAGTGCCTGTACGGTG
**
32245 ATTCATCAACCCATGATGAATTCCGTGGATTTGCACACAAAGTGTATGTACGGTG
1 ATTCATCAACCCATGATGAATTCCGTGGATTTGCACACAAAGTGCCTGTACGGTG
**
32300 ATTCATCAACCCATGATGAATT-TTTGGATTTGCACACAAAGTGCCTGTACGGTG
1 ATTCATCAACCCATGATGAATTCCGTGGATTTGCACACAAAGTGCCTGTACGGTG
*
32354 ATTCATCAACCCATAATGAATTCCGTGGATTTGCACACAAAGTGCCTGTACGGTG
1 ATTCATCAACCCATGATGAATTCCGTGGATTTGCACACAAAGTGCCTGTACGGTG
*
32409 ATTCATCAACCCATGATGAATTCTGTGGATTTGCACACAAAGTGCCTGTA
1 ATTCATCAACCCATGATGAATTCCGTGGATTTGCACACAAAGTGCCTGTA
32459 GTACACATAG
Statistics
Matches: 240, Mismatches: 27, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
54 72 0.30
55 168 0.70
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.31
Consensus pattern (55 bp):
ATTCATCAACCCATGATGAATTCCGTGGATTTGCACACAAAGTGCCTGTACGGTG
Found at i:32272 original size:109 final size:110
Alignment explanation
Indices: 32136--32458 Score: 463
Period size: 109 Copynumber: 3.0 Consensus size: 110
32126 CTATACGAAA
* * * * **
32136 ATTCATCAACCCATGATGAGTTCCGTGG-GTTGCACATATAGTGCTTGTACATTGATTCATCAAC
1 ATTCATCAACCCATGATGAATTCCGTGGATTTGCACACAAAGTGCTTGTACGGTGATTCATCAAC
* * * * * * *
32200 TCATGATAAATTCCATGAATTTGTACACATAGTGCATGTACGGTG
66 CCATGATGAATTCTATGGATTTGCACACAAAGTGCCTGTACGGTG
32245 ATTCATCAACCCATGATGAATTCCGTGGATTTGCACACAAAGTG-TATGTACGGTGATTCATCAA
1 ATTCATCAACCCATGATGAATTCCGTGGATTTGCACACAAAGTGCT-TGTACGGTGATTCATCAA
*
32309 CCCATGATGAATT-TTTGGATTTGCACACAAAGTGCCTGTACGGTG
65 CCCATGATGAATTCTATGGATTTGCACACAAAGTGCCTGTACGGTG
* *
32354 ATTCATCAACCCATAATGAATTCCGTGGATTTGCACACAAAGTGCCTGTACGGTGATTCATCAAC
1 ATTCATCAACCCATGATGAATTCCGTGGATTTGCACACAAAGTGCTTGTACGGTGATTCATCAAC
*
32419 CCATGATGAATTCTGTGGATTTGCACACAAAGTGCCTGTA
66 CCATGATGAATTCTATGGATTTGCACACAAAGTGCCTGTA
32459 GTACACATAG
Statistics
Matches: 193, Mismatches: 17, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
109 128 0.66
110 65 0.34
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.31
Consensus pattern (110 bp):
ATTCATCAACCCATGATGAATTCCGTGGATTTGCACACAAAGTGCTTGTACGGTGATTCATCAAC
CCATGATGAATTCTATGGATTTGCACACAAAGTGCCTGTACGGTG
Found at i:32407 original size:164 final size:164
Alignment explanation
Indices: 32136--32452 Score: 456
Period size: 164 Copynumber: 1.9 Consensus size: 164
32126 CTATACGAAA
* * * * * *
32136 ATTCATCAACCCATGATGAGTTCCGTGGGTTGCACATATAGTGCTTGTACATTGATTCATCAACT
1 ATTCATCAACCCATGATGAATTCCGTGGGTTGCACACAAAGTGCCTGTACAGTGATTCATCAACC
* * *
32201 CATGATAAATTCCATGAATTTGTACACATAGTGCATGTACGGTGATTCATCAACCCATGATGAAT
66 CATAATAAATTCCATGAATTTGCACACAAAGTGCATGTACGGTGATTCATCAACCCATGATGAAT
32266 TCCGTGGATTTGCACACAAAGTGTATGTACGGTG
131 TCCGTGGATTTGCACACAAAGTGTATGTACGGTG
** * *
32300 ATTCATCAACCCATGATGAATT-TTTGGATTTGCACACAAAGTGCCTGTACGGTGATTCATCAAC
1 ATTCATCAACCCATGATGAATTCCGTGG-GTTGCACACAAAGTGCCTGTACAGTGATTCATCAAC
* * * *
32364 CCATAATGAATTCCGTGGATTTGCACACAAAGTGCCTGTACGGTGATTCATCAACCCATGATGAA
65 CCATAATAAATTCCATGAATTTGCACACAAAGTGCATGTACGGTGATTCATCAACCCATGATGAA
*
32429 TTCTGTGGATTTGCACACAAAGTG
130 TTCCGTGGATTTGCACACAAAGTG
32453 CCTGTAGTAC
Statistics
Matches: 134, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
163 3 0.02
164 131 0.98
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.31
Consensus pattern (164 bp):
ATTCATCAACCCATGATGAATTCCGTGGGTTGCACACAAAGTGCCTGTACAGTGATTCATCAACC
CATAATAAATTCCATGAATTTGCACACAAAGTGCATGTACGGTGATTCATCAACCCATGATGAAT
TCCGTGGATTTGCACACAAAGTGTATGTACGGTG
Found at i:32411 original size:27 final size:27
Alignment explanation
Indices: 32326--32411 Score: 63
Period size: 27 Copynumber: 3.1 Consensus size: 27
32316 TGAATTTTTG
32326 GATTTGCACACAAAGTGCCTGTACGGT
1 GATTTGCACACAAAGTGCCTGTACGGT
* ** *
32353 GATTCAT-CAACCCATAA-TGAAT-T-CCGT
1 GATT--TGC-ACACA-AAGTGCCTGTACGGT
32380 GGATTTGCACACAAAGTGCCTGTACGGT
1 -GATTTGCACACAAAGTGCCTGTACGGT
32408 GATT
1 GATT
32412 CATCAACCCA
Statistics
Matches: 42, Mismatches: 8, Indels: 18
0.62 0.12 0.26
Matches are distributed among these distances:
25 2 0.05
26 8 0.19
27 13 0.31
28 9 0.21
29 8 0.19
30 2 0.05
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (27 bp):
GATTTGCACACAAAGTGCCTGTACGGT
Found at i:32924 original size:94 final size:96
Alignment explanation
Indices: 32798--33006 Score: 325
Period size: 95 Copynumber: 2.2 Consensus size: 96
32788 TTGATACTAC
* * *
32798 TACCCTGGTACCGATACT-TCTATACTATGGTACCGATA-CCCCTTCAAGTATCGATACCAAAAT
1 TACCATGGTATCGATACTATCTATACTAAGGTACCGATACCCCCTTCAAGTATCGATACCAAAAT
* *
32861 TAGGTTCGATGATGCTTGGTATCGATACCCT
66 TAGATTCGATGATGCTTGGTATCGATACCCA
*
32892 TACCATGGTATCGATACTATC-ATACTAAGGTACCGATACCCCCTTCCAGTATCGATACCAAAAT
1 TACCATGGTATCGATACTATCTATACTAAGGTACCGATACCCCCTTCAAGTATCGATACCAAAAT
*
32956 TAGATTCGATGTTGCTTGGTATCGATACCCA
66 TAGATTCGATGATGCTTGGTATCGATACCCA
*
32987 TATCATGGTATCGATACTAT
1 TACCATGGTATCGATACTAT
33007 GTCTTCGGTA
Statistics
Matches: 105, Mismatches: 8, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
94 32 0.30
95 73 0.70
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.31
Consensus pattern (96 bp):
TACCATGGTATCGATACTATCTATACTAAGGTACCGATACCCCCTTCAAGTATCGATACCAAAAT
TAGATTCGATGATGCTTGGTATCGATACCCA
Found at i:39355 original size:19 final size:20
Alignment explanation
Indices: 39325--39375 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
39315 CGGCCAAGAG
* *
39325 CATGTATCTTCAT-TAAAAT
1 CATGTATTTTCATCAAAAAT
*
39344 CATGTGTTTTCATCAAAAAT
1 CATGTATTTTCATCAAAAAT
39364 CATGTATTTTCA
1 CATGTATTTTCA
39376 AAGGGGTTTC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 11 0.41
20 16 0.59
ACGTcount: A:0.33, C:0.16, G:0.08, T:0.43
Consensus pattern (20 bp):
CATGTATTTTCATCAAAAAT
Found at i:42254 original size:19 final size:20
Alignment explanation
Indices: 42230--42280 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
42220 CGGTCAAGAG
* *
42230 CATGTATCTTCAT-TAAAAT
1 CATGTATTTTCATCAAAAAT
42249 CATGTATTTTCATCAAAAAT
1 CATGTATTTTCATCAAAAAT
42269 CATGTATTTTCA
1 CATGTATTTTCA
42281 AAGGGGTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 12 0.41
20 17 0.59
ACGTcount: A:0.35, C:0.16, G:0.06, T:0.43
Consensus pattern (20 bp):
CATGTATTTTCATCAAAAAT
Found at i:43022 original size:8 final size:8
Alignment explanation
Indices: 42994--43045 Score: 72
Period size: 8 Copynumber: 6.5 Consensus size: 8
42984 TTGGAGTGTA
42994 AAAAGAAAG
1 AAAAG-AAG
43003 AAAAGATA-
1 AAAAGA-AG
43011 AAAAGAAG
1 AAAAGAAG
43019 AAAAGAAG
1 AAAAGAAG
43027 AAAAGAAG
1 AAAAGAAG
43035 AAAA-AAG
1 AAAAGAAG
43042 AAAA
1 AAAA
43046 AGATTTCAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
7 8 0.20
8 27 0.66
9 6 0.15
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.02
Consensus pattern (8 bp):
AAAAGAAG
Found at i:46394 original size:19 final size:20
Alignment explanation
Indices: 46364--46414 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
46354 CGGCCAAGAG
* *
46364 CATGTATCTTCAT-TAAAAT
1 CATGTATTTTCATCAAAAAT
*
46383 CATGTGTTTTCATCAAAAAT
1 CATGTATTTTCATCAAAAAT
46403 CATGTATTTTCA
1 CATGTATTTTCA
46415 AAGGGGTTTC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 11 0.41
20 16 0.59
ACGTcount: A:0.33, C:0.16, G:0.08, T:0.43
Consensus pattern (20 bp):
CATGTATTTTCATCAAAAAT
Found at i:51795 original size:26 final size:27
Alignment explanation
Indices: 51765--51815 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
51755 CTGACGTGAC
*
51765 AGTTTT-TAGAAGGTCCAATCAACAGT
1 AGTTTTCTAGAAGATCCAATCAACAGT
*
51791 AGTTTTCTAGAAGATCTAATCAACA
1 AGTTTTCTAGAAGATCCAATCAACA
51816 CCTTCTGGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (27 bp):
AGTTTTCTAGAAGATCCAATCAACAGT
Found at i:55955 original size:29 final size:29
Alignment explanation
Indices: 55927--55990 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
55917 AGTAAGAAAT
55927 TTATAAATATG-TAA-ATGAGGGATTTAAA
1 TTATAAATATGATAATATGAGGGA-TTAAA
* * *
55955 TGATAAATATGATAATTTTAGGGATTAAA
1 TTATAAATATGATAATATGAGGGATTAAA
55984 TTATAAA
1 TTATAAA
55991 ACCAACTAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
28 10 0.33
29 14 0.47
30 6 0.20
ACGTcount: A:0.47, C:0.00, G:0.16, T:0.38
Consensus pattern (29 bp):
TTATAAATATGATAATATGAGGGATTAAA
Found at i:57780 original size:138 final size:138
Alignment explanation
Indices: 57539--57792 Score: 312
Period size: 138 Copynumber: 1.8 Consensus size: 138
57529 TTGGAAGACG
* * * * * *
57539 GGTCTGCTCCACTCTTCTTTTAGGGGAGATCAGACTTGATCTATTCCTCTTTTTTAGGTAGTCAG
1 GGTCTGCTCCACTCTTCTTTCAGGGGAGATCAAACTTGATATATTCCACTTTTTCAGGCAGTCAG
* * *
57604 ATCAATATTAGAAGATGAGTCTATTCTACTATTCTTTCAGGGGAGATCAGAGTCGAGAAATCTTT
66 ATCAATATTAGAAGACGAGTCTATTCCACTATTCTTTCAAGGGAGATCAGAGTCGAGAAATCTTT
57669 GGAATATA
131 GGAATATA
* * * * * *
57677 GGTCTTCTCCACTTTTCTTTCAGGGGAGATTAAACTTGATATGTTCCACTTTTTCGGGCAGTCAT
1 GGTCTGCTCCACTCTTCTTTCAGGGGAGATCAAACTTGATATATTCCACTTTTTCAGGCAGTCAG
* * * * *
57742 ATCAATGTT-GTAAGACGGGTCTGTTCCACTTTTTTTTCAAGGGAGATCAGA
66 ATCAATATTAG-AAGACGAGTCTATTCCACTATTCTTTCAAGGGAGATCAGA
57793 CTTGATCTGT
Statistics
Matches: 95, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
137 1 0.01
138 94 0.99
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37
Consensus pattern (138 bp):
GGTCTGCTCCACTCTTCTTTCAGGGGAGATCAAACTTGATATATTCCACTTTTTCAGGCAGTCAG
ATCAATATTAGAAGACGAGTCTATTCCACTATTCTTTCAAGGGAGATCAGAGTCGAGAAATCTTT
GGAATATA
Found at i:57814 original size:82 final size:82
Alignment explanation
Indices: 57678--57875 Score: 233
Period size: 82 Copynumber: 2.4 Consensus size: 82
57668 TGGAATATAG
* * *
57678 GTCTTCTCCACTTTTCTTTCAGGGGAGATTAA-ACTTGATATGTTCCACTTTTTCGGGCAGTCAT
1 GTCTTCTCCACTTTTCTTTCAAGGGAGA-TAAGACTTGATATGTTCCACTTTTTCGAGCAGTCAG
* *
57742 ATCAATGTTGTAAGACGG
65 ATCAATGTTGGAAGACGA
* * * *
57760 GTCTGT-TCCACTTTTTTTTCAAGGGAGATCAGACTTGATCTGTTCCTA-TTTTTCGAGTAGTCA
1 GTCT-TCTCCACTTTTCTTTCAAGGGAGATAAGACTTGATATGTTCC-ACTTTTTCGAGCAGTCA
*
57823 GCTCAATGTTGGAAGACGA
64 GATCAATGTTGGAAGACGA
* *
57842 GTCTTCTCCACTCTTCTTT-AAGAGAGATAAGACT
1 GTCTTCTCCACTTTTCTTTCAAGGGAGATAAGACT
57876 CAAGAAATCT
Statistics
Matches: 98, Mismatches: 14, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
81 16 0.16
82 80 0.82
83 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (82 bp):
GTCTTCTCCACTTTTCTTTCAAGGGAGATAAGACTTGATATGTTCCACTTTTTCGAGCAGTCAGA
TCAATGTTGGAAGACGA
Found at i:57950 original size:219 final size:219
Alignment explanation
Indices: 57528--58094 Score: 735
Period size: 219 Copynumber: 2.6 Consensus size: 219
57518 TGAGATAAAC
* * * * *
57528 GTTGGAAGACGGGTCTGCTCCACTCTTCTTTT-AGGGGAGATCAGACTTGATCTATTCCTCTTTT
1 GTTGGAAGACGGGTCTGTTCCACT-TTTTTTTCAAGGGAGATCAGACTTGATCTGTTCCTATTTT
* * * * * *
57592 T-TAGGTAGTCAGATCAATATTAGAAGATGAGTCTAT-TCTACTATTCTTTCAGGGGAGATCAGA
65 TCGA-GTAGTCAGATCAATGTTGGAAGATGAGTCT-TCTCCACTATTCTTT-AAGGGAGATAAGA
* * * * * * *
57655 GTCGAGAAATCTTTGGAATATAGGTCTTCTCCACTTTTCTTTCAGGGGAGATTAAACTTGATATG
127 CTCAAGAAATCTTTGGAAGACAGGTCTGCTCCACTCTTCTTTCAGGGGAGATCAAACTTGATATG
*
57720 TTCCACTTTTTCGGGCAGTCATATCAAT
192 TTCCACTTTTTCGGGCAGTCAGATCAAT
*
57748 GTTGTAAGACGGGTCTGTTCCACTTTTTTTTCAAGGGAGATCAGACTTGATCTGTTCCTATTTTT
1 GTTGGAAGACGGGTCTGTTCCACTTTTTTTTCAAGGGAGATCAGACTTGATCTGTTCCTATTTTT
* * * *
57813 CGAGTAGTCAGCTCAATGTTGGAAGACGAGTCTTCTCCACTCTTCTTTAAGAGAGATAAGACTCA
66 CGAGTAGTCAGATCAATGTTGGAAGATGAGTCTTCTCCACTATTCTTTAAGGGAGATAAGACTCA
* * *
57878 AGAAATCTTTGGAAGACAGGTCTGGTCCACTCTTCTTTCAGGGGAGATCAGACTTGATCTGTTCC
131 AGAAATCTTTGGAAGACAGGTCTGCTCCACTCTTCTTTCAGGGGAGATCAAACTTGATATGTTCC
* *
57943 TCTTTTTCGGGTAGTCAGATCAAT
196 ACTTTTTCGGGCAGTCAGATCAAT
* * * * * * *
57967 GTTGGAAGATGGATCTGTTCCACTCTTCTTTCATGGGAGATTAGACTTGATATGTTCCTATTTTT
1 GTTGGAAGACGGGTCTGTTCCACTTTTTTTTCAAGGGAGATCAGACTTGATCTGTTCCTATTTTT
* *
58032 CGGGTAGTCAGATCAATGTTGGAAGATGAGTCTTCTCCACTATTCTTTTAGGGAGATAAGACT
66 CGAGTAGTCAGATCAATGTTGGAAGATGAGTCTTCTCCACTATTCTTTAAGGGAGATAAGACT
58095 TGATCCGTTT
Statistics
Matches: 301, Mismatches: 43, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
219 211 0.70
220 89 0.30
221 1 0.00
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (219 bp):
GTTGGAAGACGGGTCTGTTCCACTTTTTTTTCAAGGGAGATCAGACTTGATCTGTTCCTATTTTT
CGAGTAGTCAGATCAATGTTGGAAGATGAGTCTTCTCCACTATTCTTTAAGGGAGATAAGACTCA
AGAAATCTTTGGAAGACAGGTCTGCTCCACTCTTCTTTCAGGGGAGATCAAACTTGATATGTTCC
ACTTTTTCGGGCAGTCAGATCAAT
Found at i:58023 original size:82 final size:81
Alignment explanation
Indices: 57897--58126 Score: 320
Period size: 82 Copynumber: 2.8 Consensus size: 81
57887 TGGAAGACAG
* *
57897 GTCTGGTCCACTCTTCTTTCAGGGGAGATCAGACTTGATCTGTTCCTCTTTTTCGGGTAGTCAGA
1 GTCTGTTCCACTCTTCTTTCA-GGGAGATAAGACTTGATCTGTTCCTCTTTTTCGGGTAGTCAGA
57962 TCAATGTTGGAAGATG-
65 TCAATGTTGGAAGATGA
* * *
57978 GATCTGTTCCACTCTTCTTTCATGGGAGATTAGACTTGATATGTTCCTATTTTTCGGGTAGTCAG
1 G-TCTGTTCCACTCTTCTTTCA-GGGAGATAAGACTTGATCTGTTCCTCTTTTTCGGGTAGTCAG
58043 ATCAATGTTGGAAGATGA
64 ATCAATGTTGGAAGATGA
* * * * *
58061 GTCT-TCTCCACTATTCTTTTAGGGAGATAAGACTTGATCCGTTTCTCTTTTTTGGGTAGTCAGA
1 GTCTGT-TCCACTCTTCTTTCAGGGAGATAAGACTTGATCTGTTCCTCTTTTTCGGGTAGTCAGA
58125 TC
65 TC
58127 GAGTCTTCTC
Statistics
Matches: 133, Mismatches: 13, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
81 41 0.31
82 91 0.68
83 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.23, T:0.39
Consensus pattern (81 bp):
GTCTGTTCCACTCTTCTTTCAGGGAGATAAGACTTGATCTGTTCCTCTTTTTCGGGTAGTCAGAT
CAATGTTGGAAGATGA
Found at i:59185 original size:11 final size:11
Alignment explanation
Indices: 59160--59202 Score: 59
Period size: 12 Copynumber: 3.7 Consensus size: 11
59150 TTTTTTTCCA
*
59160 TTTTCTTTCTTT
1 TTTTCTTT-TAT
59172 TTTTCTTTTAT
1 TTTTCTTTTAT
59183 TTTTCTTTTATT
1 TTTTCTTTTA-T
59195 TTTTCTTT
1 TTTTCTTT
59203 ACTTCAGGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
11 12 0.41
12 17 0.59
ACGTcount: A:0.05, C:0.12, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTCTTTTAT
Found at i:65688 original size:21 final size:22
Alignment explanation
Indices: 65659--65699 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
65649 AATAGCCCTA
* *
65659 ATTTCTTCTTCTAGTTGTTTCC
1 ATTTCTTCTTCAAATTGTTTCC
65681 ATTT-TTCTTCAAATTGTTT
1 ATTTCTTCTTCAAATTGTTT
65700 GCTTGACTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.15, C:0.17, G:0.07, T:0.61
Consensus pattern (22 bp):
ATTTCTTCTTCAAATTGTTTCC
Found at i:75438 original size:22 final size:22
Alignment explanation
Indices: 75410--75451 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
75400 GCAAAGTATA
75410 ATTTCTATCATACTTAGCTATG
1 ATTTCTATCATACTTAGCTATG
75432 ATTTCTATCATACTTAGCTA
1 ATTTCTATCATACTTAGCTA
75452 GGTTTTCCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.29, C:0.19, G:0.07, T:0.45
Consensus pattern (22 bp):
ATTTCTATCATACTTAGCTATG
Found at i:75458 original size:22 final size:22
Alignment explanation
Indices: 75410--75458 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
75400 GCAAAGTATA
*
75410 ATTTCTATCATACTTAGCTATG
1 ATTTCTATCATACTTAGCTAGG
75432 ATTTCTATCATACTTAGCTAGG
1 ATTTCTATCATACTTAGCTAGG
*
75454 TTTTC
1 ATTTC
75459 CATAGCCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.24, C:0.18, G:0.10, T:0.47
Consensus pattern (22 bp):
ATTTCTATCATACTTAGCTAGG
Found at i:77353 original size:20 final size:20
Alignment explanation
Indices: 77330--77367 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
77320 AGGATTTATC
*
77330 TTTTAGATATTTTATTTTTA
1 TTTTAAATATTTTATTTTTA
*
77350 TTTTAAATATTTTCTTTT
1 TTTTAAATATTTTATTTT
77368 GTAGTTATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.71
Consensus pattern (20 bp):
TTTTAAATATTTTATTTTTA
Found at i:83798 original size:36 final size:36
Alignment explanation
Indices: 83758--83830 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
83748 GACCCAATGT
*
83758 AAATAATTGTTACACAAGCAAAGAAAATAGCCAAGA
1 AAATAATTGTTAAACAAGCAAAGAAAATAGCCAAGA
*
83794 AAATAATTGTTAAACACGCAAAGAAAATAGCCAAGA
1 AAATAATTGTTAAACAAGCAAAGAAAATAGCCAAGA
83830 A
1 A
83831 GCCTCTTGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.56, C:0.14, G:0.14, T:0.16
Consensus pattern (36 bp):
AAATAATTGTTAAACAAGCAAAGAAAATAGCCAAGA
Found at i:85334 original size:36 final size:35
Alignment explanation
Indices: 85264--85335 Score: 83
Period size: 36 Copynumber: 2.0 Consensus size: 35
85254 GTTGGAAAAT
** * *
85264 ATTTATATATTTTTTTTTAAATTTAAATTCATAAA
1 ATTTATATATTTTTTTCAAAATTAAAAATCATAAA
85299 ATTTATATAATTTTTTTACAAAATTAAAAAT-ATAAA
1 ATTTATAT-ATTTTTTT-CAAAATTAAAAATCATAAA
85335 A
1 A
85336 AAGGTTTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
35 8 0.26
36 14 0.45
37 9 0.29
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (35 bp):
ATTTATATATTTTTTTCAAAATTAAAAATCATAAA
Found at i:87158 original size:24 final size:24
Alignment explanation
Indices: 87113--87178 Score: 69
Period size: 24 Copynumber: 2.8 Consensus size: 24
87103 CGGATATATT
* * * *
87113 AGAAATCAAAATAGAATTCAGATA
1 AGAAATCAGAACAAAATCCAGATA
* *
87137 AGATATCAGAACAAAATCCAGATC
1 AGAAATCAGAACAAAATCCAGATA
*
87161 AGAAATCAGAACAGAATC
1 AGAAATCAGAACAAAATC
87179 TTGGTCAAGT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.55, C:0.15, G:0.14, T:0.17
Consensus pattern (24 bp):
AGAAATCAGAACAAAATCCAGATA
Found at i:87263 original size:19 final size:19
Alignment explanation
Indices: 87220--87256 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
87210 AAAATCAAAT
*
87220 AAAACATTCATGTTATTAG
1 AAAACATTCATGTGATTAG
87239 AAAACATTCATGTGATTA
1 AAAACATTCATGTGATTA
87257 TGGAACACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.35
Consensus pattern (19 bp):
AAAACATTCATGTGATTAG
Found at i:91545 original size:34 final size:34
Alignment explanation
Indices: 91501--91573 Score: 110
Period size: 34 Copynumber: 2.1 Consensus size: 34
91491 TCATGTTTGC
*
91501 TAAACGAACGAAAACTAATATCATAAAAAATAAA
1 TAAACAAACGAAAACTAATATCATAAAAAATAAA
* * *
91535 TAAACAAACGAATACTAATATCTTCAAAAATAAA
1 TAAACAAACGAAAACTAATATCATAAAAAATAAA
91569 TAAAC
1 TAAAC
91574 GAACTTGAAC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.62, C:0.14, G:0.04, T:0.21
Consensus pattern (34 bp):
TAAACAAACGAAAACTAATATCATAAAAAATAAA
Found at i:94639 original size:36 final size:36
Alignment explanation
Indices: 94535--94645 Score: 134
Period size: 36 Copynumber: 3.1 Consensus size: 36
94525 GAAACATAGA
* *
94535 ACATTACAATAAGGAGATAAAAACAACGAACCATAA-
1 ACATTACATTAAGGAGATAAAAACAACAAACC-TAAC
*
94571 ACATTACATTAAGAAGATAAAAACAACAAACCTAAC
1 ACATTACATTAAGGAGATAAAAACAACAAACCTAAC
* * * * *
94607 ACATTACGTTAAGGACATAAATACGACAAACCTTAC
1 ACATTACATTAAGGAGATAAAAACAACAAACCTAAC
94643 ACA
1 ACA
94646 CACCTTAAAC
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
35 3 0.05
36 62 0.95
ACGTcount: A:0.54, C:0.20, G:0.09, T:0.17
Consensus pattern (36 bp):
ACATTACATTAAGGAGATAAAAACAACAAACCTAAC
Found at i:95524 original size:32 final size:32
Alignment explanation
Indices: 95488--95559 Score: 99
Period size: 32 Copynumber: 2.2 Consensus size: 32
95478 AGGATGTTTG
95488 TTTCTGAAATAAAGTGATATATCACTAAAAAA
1 TTTCTGAAATAAAGTGATATATCACTAAAAAA
* * * *
95520 TTTCTGAAATGAAGTTATATATCACTGAAAAG
1 TTTCTGAAATAAAGTGATATATCACTAAAAAA
*
95552 TTTTTGAA
1 TTTCTGAA
95560 GTTAAGTAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.43, C:0.08, G:0.12, T:0.36
Consensus pattern (32 bp):
TTTCTGAAATAAAGTGATATATCACTAAAAAA
Found at i:95675 original size:32 final size:33
Alignment explanation
Indices: 95630--95709 Score: 101
Period size: 32 Copynumber: 2.5 Consensus size: 33
95620 AGGAAGTTTT
95630 TTTCT-AAATTGAAGTGATATATCACT-GAAAAG
1 TTTCTGAAA-TGAAGTGATATATCACTGGAAAAG
* *
95662 TTTCTGAAATGAAGTTATATATCACTGGAAAAT
1 TTTCTGAAATGAAGTGATATATCACTGGAAAAG
* *
95695 TTTATGAAGTGAAGT
1 TTTCTGAAATGAAGT
95710 AATTGTGAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
32 21 0.50
33 21 0.50
ACGTcount: A:0.39, C:0.07, G:0.17, T:0.36
Consensus pattern (33 bp):
TTTCTGAAATGAAGTGATATATCACTGGAAAAG
Found at i:95685 original size:142 final size:140
Alignment explanation
Indices: 95383--95830 Score: 528
Period size: 142 Copynumber: 3.2 Consensus size: 140
95373 GATATAACAT
** * ** *
95383 TGAAATGAAGTGATATATCACTAAAAAAAATTTGAAATGAAGTGGTTAGGAACTGAAAAGTTTTT
1 TGAAATGAAGTGATATATCACT-AAAAATTTTTGAAGTGAAGTAATTGGGAACTGAAAAGTTTTT
* * * * *
95448 GTCATTATGTATTAAATGGTGTATGATAAAAGGATGTTTGTTTCTGAAATAAAGTGATATATCAC
65 GTCATTGTGCATTAAATGGTGTATGAGAAAAGGAAGTTTTTTTCTGAAATAAAGTGATATATCAC
*
95513 TAAAAAATTTC
130 TGAAAAATTTC
* * * * *
95524 TGAAATGAAGTTATATATCACTGAAAAGTTTTTGAAGTTAAGTAATTGGGCACTGAAAATTTTTT
1 TGAAATGAAGTGATATATCACT-AAAAATTTTTGAAGTGAAGTAATTGGGAACTGAAAAGTTTTT
*
95589 GTCATTGTGCATTAAATGGTGTATGAGAAAAAGGAAGTTTTTTTCT-AAATTGAAGTGATATATC
65 GTCATTGTGCATTAAATGGTGTATGAG-AAAAGGAAGTTTTTTTCTGAAA-TAAAGTGATATATC
*
95653 ACTGAAAAGTTTC
128 ACTGAAAAATTTC
* * * *
95666 TGAAATGAAGTTATATATCACTGGAAAATTTTATGAAGTGAAGTAATTGTGAATTGAAAAGTTTT
1 TGAAATGAAGTGATATATCACT-AAAAATTTT-TGAAGTGAAGTAATTGGGAACTGAAAAGTTTT
* * *
95731 T-TCATTGTGCATTAAATGGTGTCTGAGAAAAGGACG--TTTTTCTGAAATAAAGTTATATATCA
64 TGTCATTGTGCATTAAATGGTGTATGAGAAAAGGAAGTTTTTTTCTGAAATAAAGTGATATATCA
* ** *
95793 TTG-AATTTTTT
129 CTGAAAAATTTC
*
95804 TTAAATGAAGTGATATATCACTAAAAA
1 TGAAATGAAGTGATATATCACTAAAAA
95831 AAATTTTAAA
Statistics
Matches: 265, Mismatches: 38, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
137 4 0.02
138 25 0.09
139 22 0.08
140 3 0.01
141 88 0.33
142 95 0.36
143 28 0.11
ACGTcount: A:0.38, C:0.06, G:0.19, T:0.37
Consensus pattern (140 bp):
TGAAATGAAGTGATATATCACTAAAAATTTTTGAAGTGAAGTAATTGGGAACTGAAAAGTTTTTG
TCATTGTGCATTAAATGGTGTATGAGAAAAGGAAGTTTTTTTCTGAAATAAAGTGATATATCACT
GAAAAATTTC
Found at i:95708 original size:33 final size:32
Alignment explanation
Indices: 95639--95709 Score: 97
Period size: 33 Copynumber: 2.2 Consensus size: 32
95629 TTTTCTAAAT
*
95639 TGAAGTGATATATCACTGAAAAGTTTCTGAAA
1 TGAAGTGATATATCACTGAAAAGTTTATGAAA
* * *
95671 TGAAGTTATATATCACTGGAAAATTTTATGAAG
1 TGAAGTGATATATCACT-GAAAAGTTTATGAAA
95704 TGAAGT
1 TGAAGT
95710 AATTGTGAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 16 0.47
33 18 0.53
ACGTcount: A:0.39, C:0.07, G:0.20, T:0.34
Consensus pattern (32 bp):
TGAAGTGATATATCACTGAAAAGTTTATGAAA
Found at i:95848 original size:142 final size:139
Alignment explanation
Indices: 95383--95831 Score: 512
Period size: 141 Copynumber: 3.2 Consensus size: 139
95373 GATATAACAT
** * **
95383 TGAAATGAAGTGATATATCACTAAAAAAAATT-TGAAATGAAGTGGTTAGGAACTGAAAAGTTTT
1 TGAAATGAAGTGATATATCACTAAAAAATTTTATGAAGTGAAGTAATT-GGAACTGAAAAGTTTT
* * * *
95447 TGTCATTATGTATTAAATGGTGTATGATAAAAGGATGTTTGTTTCTGAAATAAAGTGATATATCA
65 TGTCATTGTGCATTAAATGGTGTATGAGAAAAGGAAGTTT-TTTCTGAAATAAAGTGATATATCA
**
95512 CTAAAAAATTTC
129 -TTGAAAATTTC
* * * * * *
95524 TGAAATGAAGTTATATATCACTGAAAAGTTTT-TGAAGTTAAGTAATTGGGCACTGAAAATTTTT
1 TGAAATGAAGTGATATATCACTAAAAAATTTTATGAAGTGAAGTAATT-GGAACTGAAAAGTTTT
*
95588 TGTCATTGTGCATTAAATGGTGTATGAGAAAAAGGAAGTTTTTTTCT-AAATTGAAGTGATATAT
65 TGTCATTGTGCATTAAATGGTGTATGAG-AAAAGGAAG-TTTTTTCTGAAA-TAAAGTGATATAT
*
95652 CACTGAAAAGTTTC
127 CATTGAAAA-TTTC
* ** *
95666 TGAAATGAAGTTATATATCACTGGAAAATTTTATGAAGTGAAGTAATTGTGAATTGAAAAGTTTT
1 TGAAATGAAGTGATATATCACTAAAAAATTTTATGAAGTGAAGTAATTG-GAACTGAAAAGTTTT
* * *
95731 T-TCATTGTGCATTAAATGGTGTCTGAGAAAAGGACG-TTTTTCTGAAATAAAGTTATATATCAT
65 TGTCATTGTGCATTAAATGGTGTATGAGAAAAGGAAGTTTTTTCTGAAATAAAGTGATATATCAT
** *
95794 TGAATTTTTT
130 TGAAAATTTC
*
95804 TTAAATGAAGTGATATATCACTAAAAAA
1 TGAAATGAAGTGATATATCACTAAAAAA
95832 AATTTTAAAT
Statistics
Matches: 263, Mismatches: 38, Indels: 17
0.83 0.12 0.05
Matches are distributed among these distances:
138 27 0.10
139 24 0.09
140 3 0.01
141 92 0.35
142 87 0.33
143 30 0.11
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.37
Consensus pattern (139 bp):
TGAAATGAAGTGATATATCACTAAAAAATTTTATGAAGTGAAGTAATTGGAACTGAAAAGTTTTT
GTCATTGTGCATTAAATGGTGTATGAGAAAAGGAAGTTTTTTCTGAAATAAAGTGATATATCATT
GAAAATTTC
Found at i:99413 original size:40 final size:39
Alignment explanation
Indices: 99363--99477 Score: 140
Period size: 40 Copynumber: 2.9 Consensus size: 39
99353 TAATTTCAAA
* * *
99363 TTCTCAAATTATTTCACCCTAACATTTTAAATTCTTAAT
1 TTCTTAAATTATTTCACCCTAACATTCTAAATTATTAAT
* ** *
99402 TTTTTAAAATTATTTCACTATAACATACTAAATTATTAAT
1 TTCTT-AAATTATTTCACCCTAACATTCTAAATTATTAAT
* *
99442 TTCTTAAATTATTTCATCCTAACAATCTAAATTATT
1 TTCTTAAATTATTTCACCCTAACATTCTAAATTATT
99478 TTTTTAACTT
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
39 29 0.47
40 33 0.53
ACGTcount: A:0.37, C:0.16, G:0.00, T:0.47
Consensus pattern (39 bp):
TTCTTAAATTATTTCACCCTAACATTCTAAATTATTAAT
Found at i:106599 original size:530 final size:530
Alignment explanation
Indices: 105598--106661 Score: 2128
Period size: 530 Copynumber: 2.0 Consensus size: 530
105588 ACAAAGTATT
105598 TTGCTCCACCTAGGGATGTAACTGGTGCTTTCCATACGTCAGAGTGAACTAATTCTAGAACATTT
1 TTGCTCCACCTAGGGATGTAACTGGTGCTTTCCATACGTCAGAGTGAACTAATTCTAGAACATTT
105663 TTGCCTCTAGAATTTGATTTGTTGAATTTCAACCGGTGTTGCTTACCTGTTATGCAATGCTCACA
66 TTGCCTCTAGAATTTGATTTGTTGAATTTCAACCGGTGTTGCTTACCTGTTATGCAATGCTCACA
105728 CAAAGGAAGTGTTACATTTGTTAAGCCTGGAAGTAGGTTTTGCTCCACAAAGACTTTCATTCCTT
131 CAAAGGAAGTGTTACATTTGTTAAGCCTGGAAGTAGGTTTTGCTCCACAAAGACTTTCATTCCTT
105793 GTTCTGACATGTGTCCAAGTATCTGATGCCATATCATTACAGAATCTTAACTACATGAGGCAACA
196 GTTCTGACATGTGTCCAAGTATCTGATGCCATATCATTACAGAATCTTAACTACATGAGGCAACA
105858 GAGGCTTCTGCTTCTAGCAAAGTCTCTCCCTTCAGCATATACAAGTTTGCTGCTATATTTTCGCC
261 GAGGCTTCTGCTTCTAGCAAAGTCTCTCCCTTCAGCATATACAAGTTTGCTGCTATATTTTCGCC
105923 TTTCAGCACCACAAGCGCTCCACGGAACACCTTCATGATTCATTTTTGTGTTTCAATCTTGCTTG
326 TTTCAGCACCACAAGCGCTCCACGGAACACCTTCATGATTCATTTTTGTGTTTCAATCTTGCTTG
105988 CATTATTATCCAACAATCCGTAGGATAATAAATTTTTCTTCAGGCCTTTCACGTGCCGCACATCT
391 CATTATTATCCAACAATCCGTAGGATAATAAATTTTTCTTCAGGCCTTTCACGTGCCGCACATCT
106053 CGAACAACTTTAATTGTTCCATCATACATCTTCAATTTGATGGTTCCCACGCCAACGATCTCTAA
456 CGAACAACTTTAATTGTTCCATCATACATCTTCAATTTGATGGTTCCCACGCCAACGATCTCTAA
106118 GGCATGATCA
521 GGCATGATCA
106128 TTGCTCCACCTAGGGATGTAACTGGTGCTTTCCATACGTCAGAGTGAACTAATTCTAGAACATTT
1 TTGCTCCACCTAGGGATGTAACTGGTGCTTTCCATACGTCAGAGTGAACTAATTCTAGAACATTT
106193 TTGCCTCTAGAATTTGATTTGTTGAATTTCAACCGGTGTTGCTTACCTGTTATGCAATGCTCACA
66 TTGCCTCTAGAATTTGATTTGTTGAATTTCAACCGGTGTTGCTTACCTGTTATGCAATGCTCACA
106258 CAAAGGAAGTGTTACATTTGTTAAGCCTGGAAGTAGGTTTTGCTCCACAAAGACTTTCATTCCTT
131 CAAAGGAAGTGTTACATTTGTTAAGCCTGGAAGTAGGTTTTGCTCCACAAAGACTTTCATTCCTT
106323 GTTCTGACATGTGTCCAAGTATCTGATGCCATATCATTACAGAATCTTAACTACATGAGGCAACA
196 GTTCTGACATGTGTCCAAGTATCTGATGCCATATCATTACAGAATCTTAACTACATGAGGCAACA
106388 GAGGCTTCTGCTTCTAGCAAAGTCTCTCCCTTCAGCATATACAAGTTTGCTGCTATATTTTCGCC
261 GAGGCTTCTGCTTCTAGCAAAGTCTCTCCCTTCAGCATATACAAGTTTGCTGCTATATTTTCGCC
106453 TTTCAGCACCACAAGCGCTCCACGGAACACCTTCATGATTCATTTTTGTGTTTCAATCTTGCTTG
326 TTTCAGCACCACAAGCGCTCCACGGAACACCTTCATGATTCATTTTTGTGTTTCAATCTTGCTTG
106518 CATTATTATCCAACAATCCGTAGGATAATAAATTTTTCTTCAGGCCTTTCACGTGCCGCACATCT
391 CATTATTATCCAACAATCCGTAGGATAATAAATTTTTCTTCAGGCCTTTCACGTGCCGCACATCT
106583 CGAACAACTTTAATTGTTCCATCATACATCTTCAATTTGATGGTTCCCACGCCAACGATCTCTAA
456 CGAACAACTTTAATTGTTCCATCATACATCTTCAATTTGATGGTTCCCACGCCAACGATCTCTAA
106648 GGCATGATCA
521 GGCATGATCA
106658 TTGC
1 TTGC
106662 AACTATACAC
Statistics
Matches: 534, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
530 534 1.00
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.34
Consensus pattern (530 bp):
TTGCTCCACCTAGGGATGTAACTGGTGCTTTCCATACGTCAGAGTGAACTAATTCTAGAACATTT
TTGCCTCTAGAATTTGATTTGTTGAATTTCAACCGGTGTTGCTTACCTGTTATGCAATGCTCACA
CAAAGGAAGTGTTACATTTGTTAAGCCTGGAAGTAGGTTTTGCTCCACAAAGACTTTCATTCCTT
GTTCTGACATGTGTCCAAGTATCTGATGCCATATCATTACAGAATCTTAACTACATGAGGCAACA
GAGGCTTCTGCTTCTAGCAAAGTCTCTCCCTTCAGCATATACAAGTTTGCTGCTATATTTTCGCC
TTTCAGCACCACAAGCGCTCCACGGAACACCTTCATGATTCATTTTTGTGTTTCAATCTTGCTTG
CATTATTATCCAACAATCCGTAGGATAATAAATTTTTCTTCAGGCCTTTCACGTGCCGCACATCT
CGAACAACTTTAATTGTTCCATCATACATCTTCAATTTGATGGTTCCCACGCCAACGATCTCTAA
GGCATGATCA
Found at i:107972 original size:38 final size:38
Alignment explanation
Indices: 107919--108016 Score: 162
Period size: 38 Copynumber: 2.6 Consensus size: 38
107909 CGAGTTATGG
*
107919 ACCAACCAA-GCCCTTAAGCTTTGAGAGCATATTAACGA
1 ACCAA-CAATGCCCTTAGGCTTTGAGAGCATATTAACGA
*
107957 ACCAACAATGTCCTTAGGCTTTGAGAGCATATTAACGA
1 ACCAACAATGCCCTTAGGCTTTGAGAGCATATTAACGA
107995 ACCAACAATGCCCTTAGGCTTT
1 ACCAACAATGCCCTTAGGCTTT
108017 TTTTCATTGA
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
37 3 0.05
38 53 0.95
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (38 bp):
ACCAACAATGCCCTTAGGCTTTGAGAGCATATTAACGA
Found at i:109042 original size:15 final size:16
Alignment explanation
Indices: 109022--109062 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
109012 GTTTACTTCA
*
109022 GAATGATT-AAGCGCT
1 GAATGATTCAAACGCT
*
109037 GAATGATTCAAATGCT
1 GAATGATTCAAACGCT
109053 GAATGATTCA
1 GAATGATTCA
109063 GGGACTCTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 8 0.35
16 15 0.65
ACGTcount: A:0.37, C:0.12, G:0.22, T:0.29
Consensus pattern (16 bp):
GAATGATTCAAACGCT
Found at i:110653 original size:60 final size:59
Alignment explanation
Indices: 110589--110734 Score: 161
Period size: 59 Copynumber: 2.4 Consensus size: 59
110579 AGAATGATCA
** * * * *
110589 AAAAGTTTAGGGACCATTTCAGAATGA-ATGTTATAGTTTGGGGATGAAATTGAAAT-TTT
1 AAAAGTTTAAAGACCAATT-AGAATGATA-GTCATAGTTTGGAGATGAAAATGAAATATTT
*
110648 CAAAAGTTTAAAGACTAATTAGAATGATAGTCATAGTTTGGAGATGAAAATGAAATATTT
1 -AAAAGTTTAAAGACCAATTAGAATGATAGTCATAGTTTGGAGATGAAAATGAAATATTT
* *
110708 AAAAGTTTAAACACCAACTTAAAATGA
1 AAAAGTTTAAAGACCAA-TTAGAATGA
110735 AGGTTATACT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
59 46 0.63
60 27 0.37
ACGTcount: A:0.43, C:0.07, G:0.18, T:0.32
Consensus pattern (59 bp):
AAAAGTTTAAAGACCAATTAGAATGATAGTCATAGTTTGGAGATGAAAATGAAATATTT
Found at i:111705 original size:17 final size:18
Alignment explanation
Indices: 111683--111716 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
111673 TTTTTTCACC
*
111683 TTAAACTTA-AATCTAAT
1 TTAAACTCATAATCTAAT
111700 TTAAACTCATAATCTAA
1 TTAAACTCATAATCTAA
111717 AAAACCTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.38
Consensus pattern (18 bp):
TTAAACTCATAATCTAAT
Found at i:116506 original size:24 final size:23
Alignment explanation
Indices: 116479--116524 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
116469 AAATTATCTA
116479 ATTTCATACTTCTTAAATATTTTT
1 ATTTCATACTTCTTAAAT-TTTTT
* *
116503 ATTTTATATTTCTTAAATTTTT
1 ATTTCATACTTCTTAAATTTTT
116525 AATATAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.63
Consensus pattern (23 bp):
ATTTCATACTTCTTAAATTTTTT
Found at i:116787 original size:30 final size:30
Alignment explanation
Indices: 116753--116816 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
116743 CTACAGTTCG
* * *
116753 AATGAAGGTCGTCGGGTGATCTGGGCGACC
1 AATGAAGGTCGCCAGGTGATATGGGCGACC
*
116783 AATGAAGGTCGCCAGGTGGTATGGGCGACC
1 AATGAAGGTCGCCAGGTGATATGGGCGACC
116813 AATG
1 AATG
116817 CTGGCGTTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.19, G:0.39, T:0.19
Consensus pattern (30 bp):
AATGAAGGTCGCCAGGTGATATGGGCGACC
Found at i:117634 original size:30 final size:30
Alignment explanation
Indices: 117598--117664 Score: 116
Period size: 30 Copynumber: 2.2 Consensus size: 30
117588 GCCCAGACCA
*
117598 CTTCATTGGTCGCCCAGACCACCCGACGAC
1 CTTCATTGGTCGCCCAGACCACCCGACAAC
*
117628 CTTCATTGGTCGCCCAGACCACCCGGCAAC
1 CTTCATTGGTCGCCCAGACCACCCGACAAC
117658 CTTCATT
1 CTTCATT
117665 CGACCTGTAG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.19, C:0.42, G:0.18, T:0.21
Consensus pattern (30 bp):
CTTCATTGGTCGCCCAGACCACCCGACAAC
Found at i:120834 original size:34 final size:34
Alignment explanation
Indices: 120810--121147 Score: 160
Period size: 40 Copynumber: 8.8 Consensus size: 34
120800 TTATATATTT
120810 AATAATTTGGAAATATATATATAGTATAATTTTAAA
1 AATAATTTGGAAATATATATATAGTATAATTTT--A
120846 AATAATTTGGAAATATATATATA-TATAGCATAGTTTTAAA
1 AATAATTTGGAAATATATATATAGTAT---A-A-TTTT--A
** * *
120886 AATAATTTTAAAAAATATATATAGTATAGTTTTGAA
1 AATAATTTGGAAATATATATATAGTATAATTTT--A
*
120922 AATAATTTGGAAATATATATATATATAGTATAGTTTTGAA
1 AATAATTTGG--A-A-ATATATATATAGTATAATTTT--A
*
120962 AATAATTTTGGAAAAATATATATATAGTATAGTTTTGAA
1 AATAA-TTTGG--AAATATATATATAGTATAATTTT--A
* *
121001 AATAATTT-TAATATATATATATATATATAATATAGTTTGAA
1 AATAATTTGGAA-ATATATATATA-GTAT-A-AT--TTT--A
*
121042 AATAATTTTGGAAAATATATATATAGTATAGTTTTGAA
1 AATAA-TTTGG-AAATATATATATAGTATAATTTT--A
** * * *
121080 AATAATTTTAATATATATACATATATAATATAGTTTGAA
1 AATAATTTGGA-A-ATAT--ATATATAGTATAATTT-TA
121119 AATAATTTTGGAAAATATATATATA-TATA
1 AATAA-TTTGG-AAATATATATATAGTATA
121148 TATATATTTT
Statistics
Matches: 255, Mismatches: 20, Indels: 54
0.78 0.06 0.16
Matches are distributed among these distances:
35 5 0.02
36 53 0.21
37 14 0.05
38 22 0.09
39 42 0.16
40 76 0.30
41 24 0.09
42 6 0.02
43 11 0.04
44 2 0.01
ACGTcount: A:0.48, C:0.01, G:0.09, T:0.42
Consensus pattern (34 bp):
AATAATTTGGAAATATATATATAGTATAATTTTA
Found at i:121025 original size:79 final size:78
Alignment explanation
Indices: 120820--121149 Score: 474
Period size: 79 Copynumber: 4.2 Consensus size: 78
120810 AATAATTTGG
* * ** *
120820 AAATATATATATAGTATAATTTTAAAAATAATTTGGAAATATATATATATATAGCATAGTTTTAA
1 AAATATATATATAGTATAGTTTTGAAAATAATTTGGAAATATATATATATATAATATAG-TTTGA
120885 AAATAATTTT--AA
65 AAATAATTTTGGAA
*
120897 AAA-ATATATATAGTATAGTTTTGAAAATAATTTGGAAATATATATATATATAGTATAGTTTTGA
1 AAATATATATATAGTATAGTTTTGAAAATAATTTGGAAATATATATATATATAATATAG-TTTGA
120961 AAATAATTTTGGAA
65 AAATAATTTTGGAA
**
120975 AAATATATATATAGTATAGTTTTGAAAATAATTTTAATATATATATATATATATAATATAGTTTG
1 AAATATATATATAGTATAGTTTTGAAAATAATTTGGA-A-ATATATATATATATAATATAGTTTG
121040 AAAATAATTTTGG-A
64 AAAATAATTTTGGAA
* *
121054 AAATATATATATAGTATAGTTTTGAAAATAATTT-TAATATATATACATATATAATATAGTTTGA
1 AAATATATATATAGTATAGTTTTGAAAATAATTTGGAA-ATATATATATATATAATATAGTTTGA
121118 AAATAATTTTGGAA
65 AAATAATTTTGGAA
121132 AATATATATATATA-TATA
1 AA-ATATATATATAGTATA
121150 TATATTTTTC
Statistics
Matches: 237, Mismatches: 9, Indels: 13
0.92 0.03 0.05
Matches are distributed among these distances:
76 67 0.28
77 42 0.18
78 13 0.05
79 77 0.32
80 18 0.08
81 20 0.08
ACGTcount: A:0.48, C:0.01, G:0.09, T:0.42
Consensus pattern (78 bp):
AAATATATATATAGTATAGTTTTGAAAATAATTTGGAAATATATATATATATAATATAGTTTGAA
AATAATTTTGGAA
Found at i:121188 original size:77 final size:77
Alignment explanation
Indices: 120810--121149 Score: 255
Period size: 76 Copynumber: 4.4 Consensus size: 77
120800 TTATATATTT
* * * * * * *
120810 AATAA-TTTGG-AAATATATATATAGTATAATTTTAAAAATAATT-TGGAA-ATATATATATATA
1 AATAATTTTGGAAAATATATATATAATATAGTTTTCAAAATAATTAT--AATATATAGACACACA
** *
120871 TAGCATAGTTTTAAA
64 TAATATAG-TTTGAA
* * * * * * *
120886 AATAATTTT--AAAAAATATATATAGTATAGTTTTGAAAATAATT-TGGAA-ATATATATATATA
1 AATAATTTTGGAAAATATATATATAATATAGTTTTCAAAATAATTAT--AATATATAGACACACA
*
120947 TAGTATAGTTTTGAA
64 TAATATAG-TTTGAA
* * * * * * *
120962 AATAATTTTGGAAAAATATATATATAGTATAGTTTTGAAAATAATTTTAATATATATATATATAT
1 AATAATTTTGG-AAAATATATATATAATATAGTTTTCAAAATAATTAT-A-ATATATAGACACAC
121027 ATAATATAGTTTGAA
63 ATAATATAGTTTGAA
* * * * * *
121042 AATAATTTTGGAAAATATATATATAGTATAGTTTTGAAAATAATTTTAATATATATACATATATA
1 AATAATTTTGGAAAATATATATATAATATAGTTTTCAAAATAATTATAATATATAGACACACATA
121107 ATATAGTTTGAA
66 ATATAGTTTGAA
121119 AATAATTTTGGAAAATATATATATATATATA
1 AATAATTTTGGAAAATATATATATA-ATATA
121150 TATATTTTTC
Statistics
Matches: 245, Mismatches: 10, Indels: 16
0.90 0.04 0.06
Matches are distributed among these distances:
76 75 0.31
77 56 0.23
78 5 0.02
79 70 0.29
80 19 0.08
81 20 0.08
ACGTcount: A:0.48, C:0.01, G:0.09, T:0.42
Consensus pattern (77 bp):
AATAATTTTGGAAAATATATATATAATATAGTTTTCAAAATAATTATAATATATAGACACACATA
ATATAGTTTGAA
Found at i:121764 original size:22 final size:22
Alignment explanation
Indices: 121738--121788 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
121728 AGGGTCCTAT
* *
121738 AAAAAGAAGGCAAACAT-GCAAC
1 AAAAAAAAGG-AAAAATAGCAAC
*
121760 AAAAAAAAGGAAAAATAGCTAC
1 AAAAAAAAGGAAAAATAGCAAC
121782 AAAAAAA
1 AAAAAAA
121789 TAACAACTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 5 0.20
22 20 0.80
ACGTcount: A:0.69, C:0.12, G:0.14, T:0.06
Consensus pattern (22 bp):
AAAAAAAAGGAAAAATAGCAAC
Found at i:124502 original size:20 final size:20
Alignment explanation
Indices: 124456--124502 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
124446 GTGGTCATTA
* *
124456 AAGTAAAAGGTTTTCATGATG
1 AAGT-AAAGGGTTTCATGATC
*
124477 GA-TAAAGGGTTTCATGATC
1 AAGTAAAGGGTTTCATGATC
124496 AAGTAAA
1 AAGTAAA
124503 CTATAATACA
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
19 15 0.71
20 5 0.24
21 1 0.05
ACGTcount: A:0.40, C:0.06, G:0.23, T:0.30
Consensus pattern (20 bp):
AAGTAAAGGGTTTCATGATC
Found at i:128533 original size:42 final size:43
Alignment explanation
Indices: 128410--128579 Score: 270
Period size: 43 Copynumber: 4.0 Consensus size: 43
128400 ACTGGGACAT
*
128410 CTTTTGAAGGTCCGTATCATCCAGAAGTATTAATTTTGGGGCA
1 CTTTTGAAGGTCCGTATCATCCAGAAGTATTAATGTTGGGGCA
128453 CTTTTGAAGGTCCGTATCATCCAGAAGTATTAATGTTGGGGCA
1 CTTTTGAAGGTCCGTATCATCCAGAAGTATTAATGTTGGGGCA
* * *
128496 CTTTGGAAGGTTCGTATCAT-CAGAAGTATTAATGTTGGGGAA
1 CTTTTGAAGGTCCGTATCATCCAGAAGTATTAATGTTGGGGCA
* * *
128538 ATTTTGAAGGTCCATATCATCCATAAGTATTAATGTTGGGGC
1 CTTTTGAAGGTCCGTATCATCCAGAAGTATTAATGTTGGGGC
128580 GTTTTTAAGA
Statistics
Matches: 116, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
42 37 0.32
43 79 0.68
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (43 bp):
CTTTTGAAGGTCCGTATCATCCAGAAGTATTAATGTTGGGGCA
Found at i:128559 original size:85 final size:86
Alignment explanation
Indices: 128410--128579 Score: 270
Period size: 85 Copynumber: 2.0 Consensus size: 86
128400 ACTGGGACAT
* * * * *
128410 CTTTTGAAGGTCCGTATCATCCAGAAGTATTAATTTTGGGGCACTTTTGAAGGTCCGTATCATCC
1 CTTTGGAAGGTCCGTATCATCCAGAAGTATTAATGTTGGGGAAATTTTGAAGGTCCATATCATCC
128475 AGAAGTATTAATGTTGGGGCA
66 AGAAGTATTAATGTTGGGGCA
*
128496 CTTTGGAAGGTTCGTATCAT-CAGAAGTATTAATGTTGGGGAAATTTTGAAGGTCCATATCATCC
1 CTTTGGAAGGTCCGTATCATCCAGAAGTATTAATGTTGGGGAAATTTTGAAGGTCCATATCATCC
*
128560 ATAAGTATTAATGTTGGGGC
66 AGAAGTATTAATGTTGGGGC
128580 GTTTTTAAGA
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
85 59 0.77
86 18 0.23
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (86 bp):
CTTTGGAAGGTCCGTATCATCCAGAAGTATTAATGTTGGGGAAATTTTGAAGGTCCATATCATCC
AGAAGTATTAATGTTGGGGCA
Found at i:128627 original size:85 final size:84
Alignment explanation
Indices: 128431--128627 Score: 207
Period size: 85 Copynumber: 2.3 Consensus size: 84
128421 CCGTATCATC
* * * * *
128431 CAGAAGTATTAATTTTGGGGCACTTTTGAAGGTCCGTATCATCCAGAAGTATTAATGTTGGGGCA
1 CAGAAATATAAATATTGGGACA-TTTTGAAGGTCCATATCATCCAGAAGTATTAATGTTGGGGCA
* * *
128496 CTTTGGAAGGTTCGTATCAT
65 CTTTGGAAGATTCATATCAG
* * * * *
128516 CAGAAGTATTAATGTTGGGGAAATTTTGAAGGTCCATATCATCCATAAGTATTAATGTTGGGGC-
1 CAGAAATATAAATATT-GGGACATTTTGAAGGTCCATATCATCCAGAAGTATTAATGTTGGGGCA
* **
128580 GTTTTTAAGATTCATATCAG
65 CTTTGGAAGATTCATATCAG
128600 CAAGAAATAATAAATATTGGGACATTTT
1 C-AGAAAT-ATAAATATTGGGACATTTT
128628 TTATTAAGGC
Statistics
Matches: 94, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
84 15 0.16
85 68 0.72
86 11 0.12
ACGTcount: A:0.31, C:0.12, G:0.23, T:0.35
Consensus pattern (84 bp):
CAGAAATATAAATATTGGGACATTTTGAAGGTCCATATCATCCAGAAGTATTAATGTTGGGGCAC
TTTGGAAGATTCATATCAG
Found at i:129856 original size:67 final size:67
Alignment explanation
Indices: 129774--130066 Score: 334
Period size: 67 Copynumber: 4.4 Consensus size: 67
129764 TAACTTGACA
** * *
129774 TCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAACTCCCTTGCGAAGAGGTGACAATCATTGA
1 TCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAACTCCCTCACGAAGAGGAGTCAATCATTGA
*
129839 TT
66 AT
* *
129841 TCCTCGTGAACAGAAGTCAATCTTTGTTATTCCTGACTCCCTCACGAAGAGGAGTCAATCATTGA
1 TCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAACTCCCTCACGAAGAGGAGTCAATCATTGA
*
129906 CT
66 AT
* * * * * *
129908 TCCTCGTAAAAAGAAGTCAATCTTTGTTATTCCTAACTCACTCATGAAGAGGAGTCAATCCTCGA
1 TCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAACTCCCTCACGAAGAGGAGTCAATCATTGA
129973 AT
66 AT
* * * * * * *** * **
129975 TCCTCATGAAGAGTACTCAATCTTTGTTATTCATGACTTCCTCGTAAAGAAGAGTCAATCCCTGA
1 TCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAACTCCCTCACGAAGAGGAGTCAATCATTGA
*
130040 CT
66 AT
*
130042 TCCTCGTGAAGAGATGTCAATCTTT
1 TCCTCGTGAAGAGAAGTCAATCTTT
130067 CAGATTTGGT
Statistics
Matches: 192, Mismatches: 34, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
67 192 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (67 bp):
TCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAACTCCCTCACGAAGAGGAGTCAATCATTGA
AT
Found at i:130012 original size:134 final size:134
Alignment explanation
Indices: 129768--130066 Score: 373
Period size: 134 Copynumber: 2.2 Consensus size: 134
129758 AAGCTTTAAC
* * ** *
129768 TTGACATCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAACTCCCTTGCGAAGAGGTGACAAT
1 TTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAACTCACTCACGAAGAGGAGACAAT
* * * * * * *
129833 CATTGATTTCCTCGTGAACAGAAGTCAATCTTTGTTATTCCTGACTCCCTCACGAAGAGGAGTCA
66 CATCGAATTCCTCATGAACAGAACTCAATCTTTGTTATTCATGACTCCCTCACAAAGAAGAGTCA
129898 ATCA
131 ATCA
* * * *
129902 TTGACTTCCTCGTAAAAAGAAGTCAATCTTTGTTATTCCTAACTCACTCATGAAGAGGAGTCAAT
1 TTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAACTCACTCACGAAGAGGAGACAAT
* * * * **
129967 CCTCGAATTCCTCATGAAGAGTACTCAATCTTTGTTATTCATGACTTCCTCGTAAAGAAGAGTCA
66 CATCGAATTCCTCATGAACAGAACTCAATCTTTGTTATTCATGACTCCCTCACAAAGAAGAGTCA
*
130032 ATCC
131 ATCA
* *
130036 CTGACTTCCTCGTGAAGAGATGTCAATCTTT
1 TTGACTTCCTCGTGAAGAGAAGTCAATCTTT
130067 CAGATTTGGT
Statistics
Matches: 138, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
134 138 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (134 bp):
TTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAACTCACTCACGAAGAGGAGACAAT
CATCGAATTCCTCATGAACAGAACTCAATCTTTGTTATTCATGACTCCCTCACAAAGAAGAGTCA
ATCA
Found at i:130053 original size:29 final size:29
Alignment explanation
Indices: 130008--130063 Score: 87
Period size: 29 Copynumber: 1.9 Consensus size: 29
129998 TTGTTATTCA
130008 TGACTTCCTCGTAAAGAAGA-GTCAATCCC
1 TGACTTCCTCGTAAAG-AGATGTCAATCCC
*
130037 TGACTTCCTCGTGAAGAGATGTCAATC
1 TGACTTCCTCGTAAAGAGATGTCAATC
130064 TTTCAGATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 3 0.12
29 22 0.88
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (29 bp):
TGACTTCCTCGTAAAGAGATGTCAATCCC
Found at i:130327 original size:88 final size:88
Alignment explanation
Indices: 130062--130318 Score: 390
Period size: 88 Copynumber: 2.9 Consensus size: 88
130052 GAGATGTCAA
* *
130062 TCTTTCAGATTTGGTCTTCCTGAAGAGCAGCGAAGCAAATAAACCTCGAGTCTGATCTCCCCTAA
1 TCTTTCAGATTTGGTCTTCCTGAAGAGCAACGAAGCAAATCAACCTCGAGTCTGATCTCCCCTAA
* *
130127 AGAGTAGTGAAGTAGATTCTTCT
66 AGAGTAGTGGAGCAGATTCTTCT
* * * *
130150 TCTTTCAGATTTGGTCTTCCTAAAGAG-AAGCAAAACAAATCAACCGCGAGTCTGATCTCCCCTA
1 TCTTTCAGATTTGGTCTTCCTGAAGAGCAA-CGAAGCAAATCAACCTCGAGTCTGATCTCCCCTA
*
130214 AAGAGTAGTGGAGCATATTCTTCT
65 AAGAGTAGTGGAGCAGATTCTTCT
* * *
130238 TCTTTTAGATTTGGTCTTCCTGAAGAGCAACGAAGCAAATCAACCTCGAGTTTGATCTTCCCTAA
1 TCTTTCAGATTTGGTCTTCCTGAAGAGCAACGAAGCAAATCAACCTCGAGTCTGATCTCCCCTAA
130303 AGAGTAGTGGAGCAGA
66 AGAGTAGTGGAGCAGA
130319 CACGTCTTCC
Statistics
Matches: 150, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
87 1 0.01
88 147 0.98
89 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (88 bp):
TCTTTCAGATTTGGTCTTCCTGAAGAGCAACGAAGCAAATCAACCTCGAGTCTGATCTCCCCTAA
AGAGTAGTGGAGCAGATTCTTCT
Found at i:130818 original size:40 final size:40
Alignment explanation
Indices: 130763--130896 Score: 204
Period size: 40 Copynumber: 3.5 Consensus size: 40
130753 AATAATTTGG
130763 AAATATATATATAGTATAGTTTTGAAAATAATTTGGAAAA
1 AAATATATATATAGTATAGTTTTGAAAATAATTTGGAAAA
* *
130803 AAATATATATATAGTATAGTTTTGTAAATAATTTTG---A
1 AAATATATATATAGTATAGTTTTGAAAATAATTTGGAAAA
*
130840 ATATATATATATAGTATAGTTTTGAAAATAATTTGGAAAA
1 AAATATATATATAGTATAGTTTTGAAAATAATTTGGAAAA
*
130880 ATATATATATATA-TATA
1 AAATATATATATAGTATA
130897 TATATATATA
Statistics
Matches: 86, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
37 34 0.40
39 4 0.05
40 48 0.56
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42
Consensus pattern (40 bp):
AAATATATATATAGTATAGTTTTGAAAATAATTTGGAAAA
Found at i:130855 original size:37 final size:37
Alignment explanation
Indices: 130753--131088 Score: 299
Period size: 39 Copynumber: 9.1 Consensus size: 37
130743 TTATATATTT
*
130753 AATAATTTGGAA-ATATATATATAGTATAGTTTTGAA
1 AATAATTTTGAATATATATATATAGTATAGTTTTGAA
* * *
130789 AATAATTTGGAAAAAAATATATATATAGTATAGTTTTGTA
1 AATAATTTTG---AATATATATATATAGTATAGTTTTGAA
130829 AATAATTTTGAATATATATATATAGTATAGTTTTGAA
1 AATAATTTTGAATATATATATATAGTATAGTTTTGAA
* *
130866 AATAATTTGGAA-A-A-ATATATA-TATA--TAT--A
1 AATAATTTTGAATATATATATATAGTATAGTTTTGAA
* *
130895 TAT-A-TAT--ATATATATATATA-TATAGTTTTGAA
1 AATAATTTTGAATATATATATATAGTATAGTTTTGAA
* *
130927 AATAATTTGGAAATATATATATATATATGGTATAATTTTGAA
1 AATAATTTTG--A-ATATATATATATA--GTATAGTTTTGAA
*
130969 AATAATTTTGGAAAACTATATATATAGTATAGTTTTGAA
1 AATAATTTT-GAATA-TATATATATAGTATAGTTTTGAA
*
131008 AATAATTTTGAATATATATATATATAATATAG-TTTGAA
1 AATAATTTTG-A-ATATATATATATAGTATAGTTTTGAA
* * *
131046 AATAATTTTGGAAAATATATATATTA-TATATTTTTCAA
1 AATAATTTT-GAATATATATATA-TAGTATAGTTTTGAA
131084 AATAA
1 AATAA
131089 ATATATTTTT
Statistics
Matches: 250, Mismatches: 22, Indels: 54
0.77 0.07 0.17
Matches are distributed among these distances:
25 1 0.00
26 1 0.00
27 2 0.01
28 12 0.05
29 3 0.01
30 2 0.01
31 2 0.01
32 3 0.01
33 5 0.02
34 8 0.03
35 1 0.00
36 11 0.04
37 50 0.20
38 29 0.12
39 53 0.21
40 36 0.14
41 11 0.04
42 19 0.08
43 1 0.00
ACGTcount: A:0.46, C:0.01, G:0.10, T:0.43
Consensus pattern (37 bp):
AATAATTTTGAATATATATATATAGTATAGTTTTGAA
Found at i:130867 original size:77 final size:75
Alignment explanation
Indices: 130753--130896 Score: 252
Period size: 77 Copynumber: 1.9 Consensus size: 75
130743 TTATATATTT
130753 AATAATTTGGAAATATATATATAGTATAGTTTTGAAAATAATTTGGAAAAAAATATATATATAGT
1 AATAATTTGGAAATATATATATAGTATAGTTTTGAAAATAATTTGGAAAAAAATATATATATA-T
130818 ATAGTTTTGTA
65 ATAGTTTTGTA
* *
130829 AATAATTTTGAATATATATATATAGTATAGTTTTGAAAATAATTTGGAAAAATATATATATATAT
1 AATAATTTGGAA-ATATATATATAGTATAGTTTTGAAAATAATTTGGAAAAAAATATATATATAT
130894 ATA
65 ATA
130897 TATATATATA
Statistics
Matches: 65, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
76 15 0.23
77 50 0.77
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (75 bp):
AATAATTTGGAAATATATATATAGTATAGTTTTGAAAATAATTTGGAAAAAAATATATATATATA
TAGTTTTGTA
Found at i:130887 original size:2 final size:2
Alignment explanation
Indices: 130880--130918 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
130870 ATTTGGAAAA
130880 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
130919 GTTTTGAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:130995 original size:76 final size:72
Alignment explanation
Indices: 130908--131069 Score: 209
Period size: 80 Copynumber: 2.1 Consensus size: 72
130898 ATATATATAT
* *
130908 ATATATATATAGTTTTGAAAATAATTTGGAAATATATATATATATATGGTATAATTTTGAAAATA
1 ATATATATATAGTTTTGAAAATAATTTGG-AATATATATATATATA--ATAT-AGTTTGAAAATA
130973 ATTTTGGAAAACTA
62 ATTTTGG-AAA--A
*
130987 TATATATAGTATAGTTTTGAAAATAATTTTGAATATATATATATATAATATAGTTTGAAAATAAT
1 -ATATATA-TATAGTTTTGAAAATAATTTGGAATATATATATATATAATATAGTTTGAAAATAAT
131052 TTTGG-AAA
64 TTTGGAAAA
131060 ATATATATAT
1 ATATATATAT
131070 TATATATTTT
Statistics
Matches: 78, Mismatches: 3, Indels: 11
0.85 0.03 0.12
Matches are distributed among these distances:
71 3 0.04
72 7 0.09
73 1 0.01
75 2 0.03
77 18 0.23
78 3 0.04
80 23 0.29
81 21 0.27
ACGTcount: A:0.46, C:0.01, G:0.10, T:0.43
Consensus pattern (72 bp):
ATATATATATAGTTTTGAAAATAATTTGGAATATATATATATATAATATAGTTTGAAAATAATTT
TGGAAAA
Found at i:131743 original size:26 final size:26
Alignment explanation
Indices: 131712--131762 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
131702 AAACAACAAG
131712 GAACCAAAAGAGACAAAAA-AAACCAA
1 GAACCAAAAGA-ACAAAAAGAAACCAA
* *
131738 GAACCAACAGACCAAAAAGAAACCA
1 GAACCAAAAGAACAAAAAGAAACCA
131763 TTCGAGCAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.65, C:0.24, G:0.12, T:0.00
Consensus pattern (26 bp):
GAACCAAAAGAACAAAAAGAAACCAA
Found at i:143981 original size:21 final size:21
Alignment explanation
Indices: 143957--143996 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
143947 TTTATTTTAT
143957 AACTTTATTTCAATTATCGTA
1 AACTTTATTTCAATTATCGTA
*
143978 AACTTTGTTTCAATTATCG
1 AACTTTATTTCAATTATCG
143997 AACTTGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.15, G:0.07, T:0.47
Consensus pattern (21 bp):
AACTTTATTTCAATTATCGTA
Found at i:144044 original size:33 final size:33
Alignment explanation
Indices: 143991--144089 Score: 164
Period size: 33 Copynumber: 3.0 Consensus size: 33
143981 TTTGTTTCAA
143991 TTATCGAACTT-GAAGTTTTTAAGTATTTGAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
144023 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
* * *
144056 TTATCAAACTTGGAAGTATTTAAGTATTTCAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
144089 T
1 T
144090 ATGTTGAGTT
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
32 11 0.17
33 52 0.83
ACGTcount: A:0.32, C:0.07, G:0.15, T:0.45
Consensus pattern (33 bp):
TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
Found at i:144118 original size:13 final size:13
Alignment explanation
Indices: 144075--144129 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
144065 TTGGAAGTAT
144075 TTAAGTATTTCAA
1 TTAAGTATTTCAA
* *
144088 TTATGTTGAGTT-AA
1 TTAAG-T-ATTTCAA
144102 TTAAGTATTTCAA
1 TTAAGTATTTCAA
*
144115 TTAAGTATTTGAA
1 TTAAGTATTTCAA
144128 TT
1 TT
144130 TATCGAACTT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
12 3 0.09
13 21 0.62
14 7 0.21
15 3 0.09
ACGTcount: A:0.35, C:0.04, G:0.13, T:0.49
Consensus pattern (13 bp):
TTAAGTATTTCAA
Found at i:144551 original size:15 final size:15
Alignment explanation
Indices: 144526--144581 Score: 67
Period size: 15 Copynumber: 3.6 Consensus size: 15
144516 ATCTGGAATA
*
144526 TTAAAATCGGTTTTT
1 TTAAAACCGGTTTTT
*
144541 TTATAACCGGTTTTT
1 TTAAAACCGGTTTTT
*
144556 TAAAAAAACCGGTTTTT
1 T--TAAAACCGGTTTTT
144573 TTAAAACCG
1 TTAAAACCG
144582 AAACCGGTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
15 21 0.62
17 13 0.38
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.43
Consensus pattern (15 bp):
TTAAAACCGGTTTTT
Found at i:144590 original size:21 final size:18
Alignment explanation
Indices: 144545--144578 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
144535 GTTTTTTTAT
144545 AACCGG-TTTTTTAAAAA
1 AACCGGTTTTTTTAAAAA
144562 AACCGGTTTTTTTAAAA
1 AACCGGTTTTTTTAAAA
144579 CCGAAACCGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (18 bp):
AACCGGTTTTTTTAAAAA
Found at i:144698 original size:15 final size:17
Alignment explanation
Indices: 144672--144703 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
144662 TTCTATGGGA
144672 AAAAACCGGAT-CGGAT
1 AAAAACCGGATCCGGAT
144688 AAAAACC-GATCCGGAT
1 AAAAACCGGATCCGGAT
144704 CGGATTGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 3 0.20
16 12 0.80
ACGTcount: A:0.44, C:0.22, G:0.22, T:0.12
Consensus pattern (17 bp):
AAAAACCGGATCCGGAT
Found at i:148714 original size:16 final size:17
Alignment explanation
Indices: 148695--148732 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
148685 ATCTTATCTG
*
148695 ATATTTATCTAACTTA-
1 ATATTTACCTAACTTAT
*
148711 ATATTTACCTGACTTAT
1 ATATTTACCTAACTTAT
148728 ATATT
1 ATATT
148733 ACTATTGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.34, C:0.13, G:0.03, T:0.50
Consensus pattern (17 bp):
ATATTTACCTAACTTAT
Found at i:149785 original size:2 final size:2
Alignment explanation
Indices: 149780--150458 Score: 122
Period size: 2 Copynumber: 333.0 Consensus size: 2
149770 ATAGTTTATG
* *
149780 TA TA TA TA TA TA TA GT- TCA TA TG TA AA TA TA TA -A T- TA TA TA
1 TA TA TA TA TA TA TA -TA T-A TA TA TA TA TA TA TA TA TA TA TA TA
*
149821 GTT TA TA TA TA TA -A TA TA TA TA -A TA TA TA -A TA TA TA -A TA
1 -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
149860 TA TA -A TA TA TA -A TA TA TA -A TA TA TA -A TA TA TA AA TA TCA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A
* * * *
149899 -A CTA TA T- TA TA TA GCA TA TA AA TA TA AA CTA TA GTT TA TA TA
1 TA -TA TA TA TA TA TA -TA TA TA TA TA TA TA -TA TA -TA TA TA TA
** * *
149941 GG T- TA TA TA TA TA GTA TA TA T- TA TA TA AA TA GTT TA TA TA GT-
1 TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA -TA TA TA TA -TA
* **
149983 TCA T- TA -A TA AA CTA TA TA TA GC TCA TA TA TA TA -A TA TA TA
1 T-A TA TA TA TA TA -TA TA TA TA TA T-A TA TA TA TA TA TA TA TA
*
150023 TA GT- TCA TA TA TA -A TA TA AA CTA TA TA TA T- TA TA TA GTA TA
1 TA -TA T-A TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA -TA TA
* * * * *
150064 TA AA TA GCA -A CTA TA GTA TA TA GTT TA TA TA TA AA T- TA TA GTT
1 TA TA TA -TA TA -TA TA -TA TA TA -TA TA TA TA TA TA TA TA TA -TA
* * * *
150107 TA TA TA -A TT TT TA TA TA TA GT- TCA TA TG TA AA CTA TA TA GTA
1 TA TA TA TA TA TA TA TA TA TA -TA T-A TA TA TA TA -TA TA TA -TA
* * *
150149 TA TA TA GTT TA TA TA TG TA GTA TA TA T- TA TA TA CTA TA TA AA
1 TA TA TA -TA TA TA TA TA TA -TA TA TA TA TA TA TA -TA TA TA TA
* *
150191 TA GTT TA TA TA GT- TCA T- TA -A TA AA CTA TA TA TA TA GT- TCA
1 TA -TA TA TA TA -TA T-A TA TA TA TA TA -TA TA TA TA TA -TA T-A
* * * *
150231 TA TG TA -A AA TA TA TA GTG TA TA TA GTT TA TA TA TA TA GT- TCA
1 TA TA TA TA TA TA TA TA -TA TA TA TA -TA TA TA TA TA TA -TA T-A
** * * * *
150273 TA GG TA AA CTA TA TA -A TA TA TA TA GTT TA CA AA TA -A TA TA TA
1 TA TA TA TA -TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA
* * * * * *
150315 TGG TT TA TA TA TA GTT TA TA TA CTA CTA TG TA TA AA CTA TA TA GTT
1 T-A TA TA TA TA TA -TA TA TA TA -TA -TA TA TA TA TA -TA TA TA -TA
* * * *
150361 TA CA TA TA TA -A TA TA TA CTT TA TA TA TA AA CTA TA TA -A TT TA
1 TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA -TA TA TA TA TA TA
* * * * *
150403 TA AA CA GTT TA TA CA TA -A TA TA TA TA TA TT TCA TA TA TA TA TA
1 TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA
150446 TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA
150459 ATTGTTTCAA
Statistics
Matches: 485, Mismatches: 102, Indels: 180
0.63 0.13 0.23
Matches are distributed among these distances:
1 39 0.08
2 386 0.80
3 60 0.12
ACGTcount: A:0.45, C:0.05, G:0.06, T:0.44
Consensus pattern (2 bp):
TA
Found at i:149793 original size:21 final size:21
Alignment explanation
Indices: 149767--149842 Score: 80
Period size: 23 Copynumber: 3.3 Consensus size: 21
149757 AACTATAGTT
149767 TATATAGTTTATGTATATATA
1 TATATAGTTTATGTATATATA
149788 TATATAGTTCATATGTAAATATATAA
1 TATATAGTT--TATGT--ATATAT-A
*
149814 TTATATAGTTTATATATATAATA
1 -TATATAGTTTATGTATAT-ATA
149837 TATATA
1 TATATA
149843 ATATATAATA
Statistics
Matches: 47, Mismatches: 1, Indels: 13
0.77 0.02 0.21
Matches are distributed among these distances:
21 9 0.19
22 6 0.13
23 10 0.21
24 2 0.04
25 10 0.21
26 1 0.02
27 9 0.19
ACGTcount: A:0.43, C:0.01, G:0.07, T:0.49
Consensus pattern (21 bp):
TATATAGTTTATGTATATATA
Found at i:149837 original size:7 final size:7
Alignment explanation
Indices: 149805--149924 Score: 129
Period size: 7 Copynumber: 16.9 Consensus size: 7
149795 TTCATATGTA
149805 AATATAT
1 AATATAT
149812 AATTATAT
1 AA-TATAT
* *
149820 AGTTTAT
1 AATATAT
149827 -ATATAT
1 AATATAT
149833 AATATATAT
1 -A-ATATAT
149842 AATATAT
1 AATATAT
149849 AATATAT
1 AATATAT
149856 AATATAT
1 AATATAT
149863 AATATAT
1 AATATAT
149870 AATATAT
1 AATATAT
149877 AATATAT
1 AATATAT
149884 AATATAT
1 AATATAT
149891 AA-ATAT
1 AATATAT
149897 CAACTATAT
1 -AA-TATAT
* *
149906 TATATAG
1 AATATAT
*
149913 CATATA-
1 AATATAT
149919 AATATA
1 AATATA
149925 AACTATAGTT
Statistics
Matches: 98, Mismatches: 8, Indels: 15
0.81 0.07 0.12
Matches are distributed among these distances:
6 13 0.13
7 67 0.68
8 8 0.08
9 10 0.10
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (7 bp):
AATATAT
Found at i:150152 original size:9 final size:9
Alignment explanation
Indices: 150140--150203 Score: 58
Period size: 9 Copynumber: 6.9 Consensus size: 9
150130 ATATGTAAAC
150140 TATATAGTA
1 TATATAGTA
*
150149 TATATAGTT
1 TATATAGTA
150158 TATATATGTA
1 TATATA-GTA
*
150168 GTATATATTA
1 -TATATAGTA
150178 TATACTA-TA
1 TATA-TAGTA
* *
150187 TAAATAGTT
1 TATATAGTA
150196 TATATAGT
1 TATATAGT
150204 TCATTAATAA
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
8 2 0.04
9 31 0.69
10 6 0.13
11 6 0.13
ACGTcount: A:0.41, C:0.02, G:0.09, T:0.48
Consensus pattern (9 bp):
TATATAGTA
Found at i:150262 original size:42 final size:42
Alignment explanation
Indices: 150216--150301 Score: 136
Period size: 42 Copynumber: 2.0 Consensus size: 42
150206 ATTAATAAAC
* * *
150216 TATATATATAGTTCATATGTAAAATATATAGTGTATATAGTT
1 TATATATATAGTTCATAGGTAAAATATATAATATATATAGTT
*
150258 TATATATATAGTTCATAGGTAAACTATATAATATATATAGTT
1 TATATATATAGTTCATAGGTAAAATATATAATATATATAGTT
150300 TA
1 TA
150302 CAAATAATAT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.42, C:0.03, G:0.10, T:0.44
Consensus pattern (42 bp):
TATATATATAGTTCATAGGTAAAATATATAATATATATAGTT
Found at i:150430 original size:15 final size:14
Alignment explanation
Indices: 150420--150458 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
150410 TTTATACATA
*
150420 ATATATATATATTT
1 ATATATATATATAT
150434 CATATATATATATAT
1 -ATATATATATATAT
150449 ATATAT-TATA
1 ATATATATATA
150459 ATTGTTTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 4 0.17
14 6 0.26
15 13 0.57
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (14 bp):
ATATATATATATAT
Found at i:151139 original size:12 final size:13
Alignment explanation
Indices: 151122--151150 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
151112 CTTGATTGCA
151122 AAAATTAAAA-TT
1 AAAATTAAAATTT
151134 AAAATTAAAATTT
1 AAAATTAAAATTT
151147 AAAA
1 AAAA
151151 ACTAGACTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AAAATTAAAATTT
Found at i:155298 original size:12 final size:13
Alignment explanation
Indices: 155281--155314 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
155271 TCAAAGAATA
155281 TAAAAAGAAA-TT
1 TAAAAAGAAAGTT
155293 TAAAAAGAAAGTT
1 TAAAAAGAAAGTT
155306 T-AAAAGAAA
1 TAAAAAGAAA
155315 ATTCAAAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 18 0.86
13 3 0.14
ACGTcount: A:0.68, C:0.00, G:0.12, T:0.21
Consensus pattern (13 bp):
TAAAAAGAAAGTT
Found at i:158101 original size:22 final size:20
Alignment explanation
Indices: 158054--158101 Score: 53
Period size: 19 Copynumber: 2.3 Consensus size: 20
158044 ATAAATTTGT
158054 TGTTTTAATTAAAATAAATA
1 TGTTTTAATTAAAATAAATA
*
158074 T-TTTTTATTAAAATGACAAATA
1 TGTTTTAATTAAAAT---AAATA
158096 TGTTTT
1 TGTTTT
158102 TGGGTGCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
19 12 0.52
20 1 0.04
22 6 0.26
23 4 0.17
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (20 bp):
TGTTTTAATTAAAATAAATA
Found at i:159244 original size:5 final size:5
Alignment explanation
Indices: 159234--159258 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
159224 TTGTTATGTC
159234 TATTT TATTT TATTT TATTT TATTT
1 TATTT TATTT TATTT TATTT TATTT
159259 ACATCTTCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TATTT
Found at i:172149 original size:15 final size:15
Alignment explanation
Indices: 172126--172173 Score: 87
Period size: 15 Copynumber: 3.2 Consensus size: 15
172116 CGTAGGACTC
*
172126 CTACATCCCGAAGGA
1 CTACGTCCCGAAGGA
172141 CTACGTCCCGAAGGA
1 CTACGTCCCGAAGGA
172156 CTACGTCCCGAAGGA
1 CTACGTCCCGAAGGA
172171 CTA
1 CTA
172174 TTATACCCTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.29, C:0.33, G:0.23, T:0.15
Consensus pattern (15 bp):
CTACGTCCCGAAGGA
Found at i:172300 original size:29 final size:29
Alignment explanation
Indices: 172258--172356 Score: 182
Period size: 29 Copynumber: 3.4 Consensus size: 29
172248 TTTCATATGT
172258 TCATGTA-CTCATGTCATTTCTCTTGTGA
1 TCATGTAGCTCATGTCATTTCTCTTGTGA
172286 TCATGTAGCTCATGTCATTTCTCTTGTGA
1 TCATGTAGCTCATGTCATTTCTCTTGTGA
172315 TCATGTAGCTCATGTCATTTCTCTTGTGA
1 TCATGTAGCTCATGTCATTTCTCTTGTGA
*
172344 TCATGTATCTCAT
1 TCATGTAGCTCAT
172357 ATCACTTCAT
Statistics
Matches: 69, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
28 7 0.10
29 62 0.90
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.45
Consensus pattern (29 bp):
TCATGTAGCTCATGTCATTTCTCTTGTGA
Found at i:172380 original size:23 final size:26
Alignment explanation
Indices: 172343--172411 Score: 85
Period size: 24 Copynumber: 2.8 Consensus size: 26
172333 TTCTCTTGTG
172343 ATCATGTATCTCATATCAC-T-TCAT
1 ATCATGTATCTCATATCACATGTCAT
172367 ATCATGT-TCTCATATCACATGTCAT
1 ATCATGTATCTCATATCACATGTCAT
* *
172392 ATCA--CATATCATATCACATG
1 ATCATGTATCTCATATCACATG
172412 AACACATATA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
23 11 0.28
24 21 0.52
25 8 0.20
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.38
Consensus pattern (26 bp):
ATCATGTATCTCATATCACATGTCAT
Found at i:172393 original size:12 final size:12
Alignment explanation
Indices: 172376--172411 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
172366 TATCATGTTC
172376 TCATATCACATG
1 TCATATCACATG
*
172388 TCATATCACATA
1 TCATATCACATG
172400 TCATATCACATG
1 TCATATCACATG
172412 AACACATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (12 bp):
TCATATCACATG
Found at i:172829 original size:64 final size:64
Alignment explanation
Indices: 172721--172897 Score: 221
Period size: 64 Copynumber: 2.8 Consensus size: 64
172711 TAATGAAGGT
* * * ** * * **
172721 ATGCATCGATGCACTACTGATGCATCGGTGCATAAAAGGTATTCGATGTAGT-ATTATTGCTGGG
1 ATGCATCGATGCACTACTTATGCATCGATGCACAAATTGCATTCGATGT-GTCACTATTAATGGG
* * *
172785 ATGCATCGATGCACTCCTTATGCATCGATGCACCAATTGCATTCGATGTTTCACTATTAATGGG
1 ATGCATCGATGCACTACTTATGCATCGATGCACAAATTGCATTCGATGTGTCACTATTAATGGG
*
172849 ATGCATCGATGCACTACTTATGCATCGATGCACGAATTGCATTCGATGT
1 ATGCATCGATGCACTACTTATGCATCGATGCACAAATTGCATTCGATGT
172898 CTTTATTTTA
Statistics
Matches: 98, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
63 1 0.01
64 97 0.99
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (64 bp):
ATGCATCGATGCACTACTTATGCATCGATGCACAAATTGCATTCGATGTGTCACTATTAATGGG
Found at i:172918 original size:64 final size:64
Alignment explanation
Indices: 172784--172945 Score: 211
Period size: 64 Copynumber: 2.5 Consensus size: 64
172774 TTATTGCTGG
* * *
172784 GATGCATCGATGCACTCCTTATGCATCGATGCACCAATTGCATTCGATGTTTCACTATTAATGG
1 GATGCATCGATGCACTACTTATGCATCGATGCACCAATTGCATTCGATGTTTCACTATTAAAGA
* * *
172848 GATGCATCGATGCACTACTTATGCATCGATGCACGAATTGCATTCGATGTCTTTA-TTTTAAA-A
1 GATGCATCGATGCACTACTTATGCATCGATGCACCAATTGCATTCGATGT-TTCACTATTAAAGA
** *
172911 GAGTGCATCGATGCACTACCAATGCATCGGTGCAC
1 GA-TGCATCGATGCACTACTTATGCATCGATGCAC
172946 ATTCAAACAA
Statistics
Matches: 87, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
63 2 0.02
64 82 0.94
65 3 0.03
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (64 bp):
GATGCATCGATGCACTACTTATGCATCGATGCACCAATTGCATTCGATGTTTCACTATTAAAGA
Found at i:176995 original size:40 final size:40
Alignment explanation
Indices: 176940--177061 Score: 217
Period size: 40 Copynumber: 3.0 Consensus size: 40
176930 ACCGTAGTGC
*
176940 TACACATAAGGTCGTGCCCACCATATACACCAAAGTATAT
1 TACACATAAGGTCGTGCCCACCATATACACCAAAGTGTAT
176980 TACACATAAGGTCGTGCCCACCATATACACCAAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCAAAGTGTAT
* *
177020 TACACATAAGGTCGTTCCCACCATATACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCAAAGTGTAT
177060 TA
1 TA
177062 TAAACCTGCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 79 1.00
ACGTcount: A:0.35, C:0.27, G:0.14, T:0.24
Consensus pattern (40 bp):
TACACATAAGGTCGTGCCCACCATATACACCAAAGTGTAT
Done.