genome.fa.s4516.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004516.1 Hibiscus syriacus cultivar Beakdansim tig00009959_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75819

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1476--1518	21	2.0	21	100	0	86	9	23	39	27	1.85
8012--8042	12	2.7	11	90	9	53	25	9	0	64	1.24
14564--14929	179	2.1	178	85	0	498	28	15	22	34	1.94
14753--15052	134	2.2	134	86	2	370	29	15	21	34	1.94
15553--15653	42	2.4	41	78	1	112	30	20	21	26	1.98
15623--15675	20	2.7	20	90	0	88	30	28	24	16	1.97
15644--17147	233	6.5	231	87	3	2099	34	17	15	32	1.92
16263--16369	42	2.6	41	76	5	108	33	21	19	25	1.97
15644--17152	468	3.2	464	86	3	2115	34	17	15	32	1.92
16964--17063	42	2.4	42	80	5	105	31	22	22	25	1.98
22219--22258	21	1.9	21	100	0	80	10	25	37	27	1.88
23645--23726	23	3.7	22	85	6	103	19	25	35	19	1.95
29625--29665	18	2.3	18	87	4	57	17	41	21	19	1.90
29680--29836	29	5.4	29	86	1	147	33	5	20	40	1.76
29680--29857	58	3.1	57	78	10	173	34	5	19	41	1.73
30766--31057	117	2.5	117	88	3	419	18	16	32	32	1.93
37161--37201	13	3.5	13	78	21	54	17	46	21	14	1.84
37209--37357	29	5.1	27	82	6	127	34	5	18	40	1.74
37204--37357	58	2.7	59	80	8	165	34	5	19	40	1.76
38284--38572	117	2.5	117	88	2	420	18	15	33	32	1.92
41865--41895	12	2.6	12	94	0	53	80	19	0	0	0.71
54116--54204	45	2.0	45	88	0	124	28	13	21	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53946--54331	179	2.2	179	83	1	495	27	13	22	35	1.92
54159--54466	134	2.3	134	81	3	352	30	14	20	34	1.93
54964--55065	42	2.5	42	77	4	109	30	21	22	25	1.99
54774--56571	233	7.6	233	83	6	2093	34	16	16	33	1.91
56192--56247	20	2.8	20	94	0	94	32	19	26	21	1.97
63045--63069	13	1.9	13	100	0	50	56	24	4	16	1.57
64547--64581	13	2.6	14	95	4	63	45	11	17	25	1.81
64579--64615	18	2.0	19	89	5	58	62	18	0	18	1.34
65035--65114	23	3.6	22	81	6	90	22	25	32	20	1.98
69613--69655	21	2.0	21	100	0	86	9	23	39	27	1.85

Tables:   1

The End!