genome.fa.s4517.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004517.1 Hibiscus syriacus cultivar Beakdansim tig00009961_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  154385

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8677--8737	22	2.9	21	77	15	65	75	3	19	1	1.03
8673--8742	30	2.3	30	74	13	72	75	2	20	1	1.00
13637--13717	36	2.2	36	95	0	144	29	4	35	29	1.78
14059--14109	19	2.6	20	87	3	68	45	5	15	33	1.71
21635--21678	19	2.2	21	76	19	58	9	15	15	59	1.61
25053--25082	13	2.4	13	94	5	53	26	30	0	43	1.55
27960--27998	19	2.1	19	90	4	62	58	15	15	10	1.62
33479--33536	29	2.1	26	81	9	62	13	12	13	60	1.60
33687--33869	91	2.0	91	91	0	294	20	27	22	29	1.98
47405--47578	91	1.9	91	95	0	312	20	27	23	29	1.99
54054--54078	8	3.1	8	100	0	50	0	24	0	76	0.80
54796--54847	19	2.6	21	90	6	81	46	5	13	34	1.67
59698--59722	13	1.9	13	100	0	50	0	20	0	80	0.72
60023--60064	22	2.0	21	90	4	66	23	2	35	38	1.68
61439--61523	35	2.4	36	92	3	138	29	3	37	29	1.74
66354--66391	19	2.1	19	85	9	53	39	5	15	39	1.70
67118--67163	16	2.9	15	87	12	65	78	2	19	0	0.86
74459--74504	21	2.2	21	88	7	67	0	10	6	82	0.83
74459--74504	20	2.2	20	88	3	65	0	10	6	82	0.83
74462--74497	17	2.1	17	90	10	56	0	11	5	83	0.80
77998--78040	23	1.9	21	81	13	50	32	18	13	34	1.90
82563--82616	23	2.3	24	87	3	83	62	11	16	9	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82563--82622	24	2.6	23	81	7	77	63	10	18	8	1.50
85370--85399	13	2.4	13	94	5	53	43	0	30	26	1.55
88319--88369	19	2.6	20	87	3	68	45	5	15	33	1.71
128066--128108	23	1.9	21	81	13	50	32	18	11	37	1.87
135226--135294	33	2.1	33	83	5	86	31	1	36	30	1.67
135280--135365	13	7.2	12	72	22	58	29	3	37	30	1.74
135265--135366	36	2.9	36	94	1	170	26	4	36	32	1.78
142271--142313	22	2.0	22	85	0	59	34	23	20	20	1.96
145572--145609	19	2.0	20	89	5	60	36	13	5	44	1.66
146330--146392	20	3.3	19	83	14	69	77	3	19	0	0.90
146350--146396	11	4.3	11	81	10	60	78	0	21	0	0.75
146355--146389	8	4.6	8	86	13	56	77	0	22	0	0.78
146333--146391	14	4.3	13	82	18	75	77	1	20	0	0.85
146332--146396	28	2.3	29	80	20	84	78	1	20	0	0.83
146333--146396	19	3.2	19	81	18	76	78	1	20	0	0.84
146601--146634	17	1.9	18	88	5	52	14	20	0	64	1.28
149501--149557	19	2.9	20	87	10	82	36	12	8	42	1.74
149969--150006	18	2.1	19	85	5	51	23	10	0	65	1.23
150891--150942	19	2.6	21	90	6	81	46	7	13	32	1.72

Tables:   1

The End!