Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004519.1 Hibiscus syriacus cultivar Beakdansim tig00009967_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51930

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1794--1908
40
2.9
40
98
1
223
32
10
26
30
1.90
2748--2847
39
2.8
36
77
18
100
52
2
2
44
1.24
3919--3960
21
2.0
21
95
0
75
16
40
28
14
1.88
14899--14935
17
2.1
19
90
10
60
0
37
8
54
1.30
15911--15942
2
16.0
2
100
0
64
50
0
0
50
1.00
15985--16110
40
3.2
40
74
11
120
46
4
7
41
1.54
16115--16323
73
3.0
68
79
15
230
43
3
7
44
1.50
16051--16299
110
2.3
109
80
11
276
45
4
7
42
1.51
16279--16337
31
1.9
31
85
0
82
44
3
6
45
1.47
18763--18818
30
1.9
30
82
7
71
53
25
7
14
1.66
39730--39789
31
2.0
30
87
9
86
36
1
25
36
1.66
44300--44448
59
2.5
60
87
2
228
34
20
20
24
1.96
45668--45700
2
16.5
2
100
0
66
48
0
0
51
1.00
51249--51291
21
2.0
22
86
4
61
48
27
2
20
1.62

Tables:   1

The End!