Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000452.1 Hibiscus syriacus cultivar Beakdansim tig00000836_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57610

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1608--1675
30
2.3
30
84
2
84
61
7
11
19
1.53
1623--1693
30
2.3
30
87
4
97
56
8
11
23
1.62
4956--4994
19
2.0
21
90
10
64
35
20
0
43
1.52
5612--5688
30
2.5
32
79
8
79
42
15
0
41
1.47
13002--13044
20
2.2
20
86
0
59
34
20
13
30
1.92
13438--13467
16
1.9
16
93
6
53
26
46
0
26
1.53
14001--14027
5
5.4
5
100
0
54
44
18
18
18
1.87
25383--25490
14
7.7
14
74
9
78
45
28
1
24
1.64
25379--25490
7
16.0
7
72
10
54
44
29
1
24
1.64
25410--25472
28
2.2
28
88
0
90
42
30
1
25
1.64
25410--25483
28
2.6
28
82
4
87
45
28
2
22
1.66
25560--25708
7
21.4
7
75
4
68
37
32
6
22
1.81
25589--25708
21
5.7
21
79
0
87
35
34
8
22
1.84
25593--25708
35
3.3
35
80
0
124
34
35
7
22
1.83
25593--25703
14
8.4
14
78
13
92
35
34
8
22
1.84
27131--27162
16
2.1
15
94
5
55
12
9
25
53
1.68
30220--30259
17
2.4
17
91
4
64
55
0
2
42
1.13
31964--31996
16
2.1
16
88
11
50
45
0
0
54
0.99
32134--32205
37
2.1
33
82
10
81
50
2
1
45
1.25
32560--32654
42
2.3
42
79
3
111
53
15
9
21
1.70
37585--37628
22
1.9
24
86
9
65
50
4
0
45
1.22
38826--38942
60
2.0
60
83
6
148
32
13
4
49
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39140--39257
60
2.0
60
86
3
166
48
1
14
35
1.54
41551--41667
60
2.0
60
83
6
148
32
13
4
49
1.62
41865--41982
60
2.0
60
86
3
166
48
1
14
35
1.54
42530--42565
6
6.0
6
96
0
54
33
44
0
22
1.53
46912--46957
22
2.1
22
91
0
74
26
32
21
19
1.97
46952--46994
11
3.9
11
87
0
68
30
30
13
25
1.94
47492--47555
21
3.0
21
81
4
74
28
21
23
26
1.99
48525--48566
19
2.2
19
79
12
50
61
0
33
4
1.17
53825--53859
11
3.2
11
100
0
70
25
28
17
28
1.97
54358--54421
21
3.0
21
88
4
101
26
23
26
23
2.00
55387--55428
19
2.2
19
79
12
50
59
0
35
4
1.19
56433--56499
30
2.2
31
83
5
82
25
7
1
65
1.27

Tables:   1

The End!