genome.fa.s4520.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004520.1 Hibiscus syriacus cultivar Beakdansim tig00009968_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72616

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8278--8932	81	8.1	81	90	0	968	30	21	11	36	1.89
9081--9300	55	4.0	55	85	5	268	30	20	12	36	1.89
17467--17721	124	2.0	125	98	0	494	34	13	6	45	1.70
20755--20796	20	2.1	20	90	0	66	19	4	4	71	1.22
20860--20924	25	2.9	21	75	16	67	26	6	21	46	1.75
20860--20958	43	2.2	45	85	5	130	27	8	19	45	1.78
23077--23143	27	2.5	27	78	4	73	44	19	13	22	1.85
25683--25770	33	2.7	32	87	0	122	23	23	17	35	1.95
27980--28024	12	3.7	12	93	3	72	48	0	0	51	1.00
29459--29483	13	1.9	13	100	0	50	40	8	24	28	1.83
31636--31948	75	4.2	76	81	5	341	42	10	14	32	1.79
31636--31949	150	2.1	151	85	4	420	42	10	14	32	1.80
31944--32014	23	3.1	23	80	9	92	39	12	15	32	1.85
32098--32138	21	2.0	20	90	4	64	46	9	7	36	1.65
32231--32303	23	3.2	23	88	0	92	35	13	15	35	1.87
36630--36696	34	2.0	33	85	8	91	61	13	2	22	1.46
39000--39057	21	2.8	20	79	20	66	67	0	0	32	0.91
45437--45510	26	2.8	26	75	6	78	56	1	1	40	1.16
49662--50300	319	2.0	320	96	0	1174	34	17	18	29	1.94
51636--51671	13	2.8	13	91	0	54	36	2	8	52	1.46
52177--52226	23	2.2	23	85	3	66	14	22	12	52	1.74
62139--62193	2	28.0	2	96	3	103	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66372--66404	17	2.1	17	88	11	52	30	24	12	33	1.91

Tables:   1

The End!