genome.fa.s4523.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004523.1 Hibiscus syriacus cultivar Beakdansim tig00009979_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64640

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44--87	22	2.0	22	86	4	63	31	27	0	40	1.56
528--568	21	2.0	21	90	0	64	17	21	29	31	1.96
3963--4634	195	3.4	201	79	8	645	39	15	14	30	1.87
5902--5963	17	3.5	17	91	8	90	56	0	1	41	1.09
7032--7124	21	4.5	21	78	4	100	39	18	24	17	1.91
7113--7227	20	5.7	20	76	6	88	32	24	18	25	1.97
7032--7124	41	2.3	41	100	0	186	39	18	24	17	1.91
7110--7247	41	3.4	41	76	6	127	34	23	17	24	1.96
7414--7457	22	2.0	22	95	0	79	20	45	15	18	1.85
9059--9103	18	2.5	18	85	0	63	26	42	15	15	1.87
9590--9634	20	2.3	20	80	3	56	37	22	22	17	1.94
9634--9691	14	3.9	14	79	16	71	48	24	17	10	1.78
9618--9708	32	2.8	33	94	3	166	47	21	18	12	1.81
9720--9797	32	2.4	33	91	6	133	10	19	24	46	1.81
9770--9836	19	3.5	19	83	4	89	14	23	23	37	1.93
9782--9836	20	2.8	19	89	5	83	16	25	23	34	1.95
11844--11897	14	3.5	14	73	22	54	50	20	18	11	1.77
11921--11998	20	3.9	20	96	0	138	15	21	24	38	1.92
13052--13105	24	2.2	24	90	0	81	24	16	20	38	1.92
13280--13304	12	2.1	12	100	0	50	72	0	28	0	0.86
15598--15724	33	3.8	33	86	4	193	42	18	22	15	1.89
15599--15731	66	2.0	66	95	0	239	41	18	22	17	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15724--15766	20	2.2	20	83	4	52	16	16	23	44	1.86
15907--15943	14	2.6	14	91	0	65	45	24	0	29	1.53
16499--16678	19	9.8	19	72	16	103	43	22	21	12	1.85
16524--16622	33	3.0	33	86	1	135	38	26	24	11	1.88
16594--16683	19	4.7	19	90	5	137	46	22	18	12	1.82
16594--16683	39	2.3	38	94	1	153	46	22	18	12	1.82
16672--16714	19	2.3	19	83	0	50	9	18	20	51	1.74
16679--16759	19	4.5	19	73	16	73	9	17	23	49	1.76
17254--17306	20	2.7	20	93	0	88	26	20	28	24	1.99
17315--17368	20	2.7	20	94	0	90	25	14	24	35	1.94
17256--17389	61	2.2	61	77	6	137	22	18	24	34	1.96
17439--17479	21	2.0	21	85	0	55	34	31	17	17	1.93
17706--17743	2	19.0	2	100	0	76	50	0	0	50	1.00
20085--20161	3	25.7	3	86	0	109	35	3	0	61	1.15
20088--20172	12	7.0	12	82	10	93	36	3	0	60	1.14
20403--20455	22	2.4	22	100	0	106	13	52	33	0	1.40
32978--33015	13	2.9	14	84	11	53	81	0	13	5	0.85
34123--34856	83	8.9	83	97	0	1355	29	13	21	35	1.91
35440--36854	113	12.5	113	96	0	2516	38	12	18	31	1.88
37105--37193	3	29.7	3	88	0	133	34	3	0	61	1.12
37108--37204	12	8.0	12	84	8	108	36	3	0	60	1.12
50384--50519	7	19.1	7	81	13	57	77	0	13	9	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50389--50485	16	6.1	16	71	8	56	80	0	12	7	0.90
50390--50564	23	7.8	21	73	20	83	77	0	14	8	0.99
50425--50462	17	2.2	18	95	4	69	81	0	18	0	0.69
50418--50485	16	4.3	16	80	10	59	79	0	16	4	0.89
50444--50547	7	14.7	7	88	9	122	73	0	18	8	1.08
50405--50559	7	22.4	7	81	13	81	76	0	16	7	1.01
50379--50564	14	12.9	13	76	13	59	76	0	14	8	1.00
51837--51908	37	2.0	36	91	2	117	37	20	20	20	1.95
51923--52227	51	5.6	54	81	9	292	31	14	23	30	1.94
51933--52255	111	3.0	109	81	11	362	30	14	22	31	1.94
51976--52227	55	4.6	54	81	10	259	30	15	23	31	1.95
51979--52255	55	5.1	54	79	11	248	29	15	22	32	1.94
57705--57730	13	2.0	13	100	0	52	7	23	0	69	1.14

Tables:   1

The End!