genome.fa.s4524.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004524.1 Hibiscus syriacus cultivar Beakdansim tig00009981_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  188642

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1014--1056	20	2.2	20	87	8	61	32	4	0	62	1.15
3176--3208	12	2.8	12	95	0	57	48	27	9	15	1.74
3173--3213	12	3.4	12	86	0	55	48	21	12	17	1.79
5488--5518	11	2.8	11	95	0	53	38	22	16	22	1.92
8145--8203	21	2.8	21	89	0	82	37	28	16	16	1.92
13019--13111	24	3.9	24	87	1	134	29	23	26	20	1.99
13019--13111	47	2.0	48	91	2	152	29	23	26	20	1.99
13396--13737	37	9.0	39	89	4	470	45	2	7	44	1.46
13436--13550	25	4.4	27	68	19	75	46	3	6	43	1.47
13396--13737	114	3.0	115	89	5	516	45	2	7	44	1.46
13738--13788	7	7.6	7	77	14	54	37	0	1	60	1.08
13742--13791	19	2.6	19	84	12	66	36	0	2	62	1.07
13742--13808	22	3.2	22	81	10	70	34	0	4	61	1.16
13811--13853	16	2.5	17	85	7	52	9	9	2	79	1.03
16230--16271	15	2.9	15	86	10	52	23	11	0	64	1.27
23920--23949	15	2.1	14	93	6	51	26	10	0	63	1.26
23925--23961	18	2.1	18	94	0	65	27	8	2	62	1.37
24207--24246	20	2.0	21	90	5	64	37	27	17	17	1.92
27326--27393	35	2.0	35	97	2	129	39	19	11	29	1.87
28100--28143	18	2.4	18	88	0	61	25	9	4	61	1.45
28397--28437	21	2.0	21	95	0	73	36	29	17	17	1.92
33397--33482	44	2.0	44	90	0	136	18	18	5	56	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38710--38851	33	4.4	32	80	14	168	13	9	34	42	1.76
38719--38850	61	2.2	61	87	2	185	12	9	34	43	1.75
39446--39493	16	2.8	17	81	9	62	29	29	8	33	1.86
43882--43920	2	19.5	2	89	0	60	48	0	2	48	1.15
54772--54797	10	2.6	10	100	0	52	92	7	0	0	0.39
55466--55492	14	1.9	14	100	0	54	40	22	14	22	1.90
55984--56014	12	2.6	12	94	0	53	41	19	6	32	1.77
56007--56205	110	1.8	110	87	2	301	37	21	18	23	1.94
58272--58381	49	2.2	50	79	11	116	30	4	3	60	1.34
58775--58826	27	2.0	27	84	3	70	11	7	5	75	1.19
59264--59320	17	3.5	17	90	4	91	12	26	33	28	1.92
59264--59335	32	2.2	32	83	9	85	12	26	33	27	1.92
61482--61515	17	2.0	17	100	0	68	47	5	11	35	1.65
63135--63228	47	2.0	46	97	2	179	26	36	4	32	1.76
68499--68531	16	2.0	17	88	5	50	45	0	6	48	1.27
72474--72525	27	1.9	27	92	0	86	23	21	19	36	1.95
80285--80312	13	2.2	13	100	0	56	71	0	0	28	0.86
80362--80405	10	4.3	10	88	5	70	29	0	38	31	1.58
90934--90984	20	2.4	22	81	18	63	3	27	1	66	1.20
92910--92992	38	2.3	34	84	14	105	49	0	0	50	1.00
96180--96210	14	2.2	14	94	0	53	87	0	3	9	0.66
96322--96356	16	2.2	16	89	0	52	57	0	11	31	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97389--97441	5	10.8	5	77	18	58	77	0	3	18	0.92
97390--97441	9	5.9	9	75	11	54	76	0	3	19	0.93
97388--97451	14	5.0	12	76	16	58	76	0	3	20	0.92
97389--97451	23	2.6	24	80	12	67	76	0	3	20	0.93
97466--97754	32	8.4	33	71	17	164	44	5	3	46	1.42
97503--97745	105	2.3	106	85	3	323	44	4	4	46	1.44
97691--97818	63	2.1	61	86	8	179	49	7	2	41	1.43
97731--97827	27	3.4	27	70	24	74	49	7	2	41	1.42
97892--97939	23	2.1	23	92	0	78	60	4	0	35	1.16
98527--98599	2	36.5	2	100	0	146	50	0	0	49	1.00
103628--103667	21	1.9	21	100	0	80	30	15	0	55	1.41
104616--104740	31	4.0	31	91	2	198	38	21	18	21	1.93
120283--120416	59	2.2	61	78	10	159	32	17	5	44	1.71
123631--123655	3	8.3	3	100	0	50	68	0	0	32	0.90
123653--123681	2	14.5	2	100	0	58	51	0	0	48	1.00
123593--123717	52	2.4	51	82	11	139	57	2	2	37	1.25
126981--127027	6	7.2	6	90	9	58	0	14	4	80	0.85
127084--127118	18	1.9	18	94	0	61	0	11	0	88	0.51
127085--127142	26	2.1	27	87	9	82	0	17	0	82	0.66
127084--127138	20	2.7	20	88	8	76	0	16	0	83	0.64
134247--134298	26	1.9	28	88	7	81	71	7	5	15	1.29
137580--137617	7	5.4	7	100	0	76	71	13	0	15	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137760--137818	14	3.9	14	73	18	55	69	3	6	20	1.26
137875--137924	2	26.0	2	78	8	50	54	2	2	42	1.23
139394--139484	41	2.2	41	94	2	155	17	15	19	47	1.83
139683--139792	53	2.1	53	80	10	118	50	1	0	47	1.11
139689--139742	23	2.2	24	78	18	58	50	0	0	50	1.00
139697--139760	22	2.9	23	84	6	71	48	0	0	51	1.00
139708--139856	30	5.1	29	69	23	91	47	1	0	50	1.14
139750--139800	23	2.2	23	86	6	68	52	3	0	43	1.19
139784--139861	31	2.5	31	78	16	81	47	0	1	51	1.09
139879--139923	23	2.0	23	86	0	63	53	2	2	42	1.25
140029--140098	22	3.4	21	79	13	74	51	0	1	47	1.09
140018--140094	19	3.9	19	73	21	70	54	0	1	44	1.08
140224--140257	14	2.4	14	85	0	50	44	17	11	26	1.83
140275--140326	15	3.5	15	74	10	52	38	15	1	44	1.58
140260--140333	30	2.5	30	86	2	96	35	16	2	45	1.61
149046--149088	15	2.9	15	75	0	50	13	6	34	44	1.72
149036--149105	30	2.3	30	90	4	106	15	7	35	41	1.75
152632--152692	22	2.8	22	83	14	81	55	14	4	24	1.59
156308--156349	18	2.2	20	87	8	61	42	0	4	52	1.22
162164--162214	16	3.2	16	91	2	86	27	29	5	37	1.80
162165--162211	9	5.8	9	74	20	50	25	29	6	38	1.81
166831--166902	37	1.9	37	86	5	101	36	23	15	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166905--166940	16	2.2	16	95	0	63	27	27	5	38	1.79
169016--169083	28	2.3	30	92	5	113	41	5	10	42	1.63
169116--169145	2	15.0	2	100	0	60	50	0	0	50	1.00
175135--175216	39	2.1	39	86	4	112	40	2	42	14	1.59
177550--177633	42	2.0	42	92	0	141	30	16	17	34	1.93
179289--179325	19	2.0	18	89	5	56	59	0	0	40	0.97
182382--182451	31	2.3	31	89	0	104	22	21	20	35	1.96
187672--187698	7	3.9	7	100	0	54	44	0	0	55	0.99
187966--188092	51	2.5	51	85	7	159	24	11	11	51	1.72

Tables:   1

The End!