genome.fa.s4526.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004526.1 Hibiscus syriacus cultivar Beakdansim tig00009989_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127759

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372--415	14	3.4	14	73	23	51	22	36	2	38	1.67
364--418	24	2.3	24	93	0	92	21	36	1	40	1.64
5014--5070	22	2.6	21	75	10	51	43	3	0	52	1.18
5187--5262	11	6.4	12	69	13	59	46	1	1	51	1.17
5233--5274	17	2.4	18	76	11	52	47	0	0	52	1.00
5402--5459	21	2.9	21	82	12	61	53	0	0	46	1.00
5330--5438	51	2.2	50	76	14	116	50	0	1	46	1.18
8425--8465	19	2.2	19	100	0	82	12	0	36	51	1.40
12070--12110	18	2.3	18	87	4	57	29	7	2	60	1.36
13792--13831	18	2.2	18	95	0	71	22	32	22	22	1.98
14323--14395	26	3.0	24	71	20	71	27	5	4	63	1.35
22574--22673	2	53.5	2	76	13	79	46	0	1	53	1.07
22575--22620	25	1.9	23	86	8	65	45	0	2	52	1.13
22636--22668	17	1.9	17	93	0	57	54	0	0	45	0.99
23235--23344	55	2.0	55	100	0	220	45	7	3	43	1.49
32251--32313	3	21.7	3	77	6	58	39	0	0	60	0.97
32262--32320	20	3.0	20	73	9	59	37	0	0	62	0.95
32249--32313	29	2.2	29	83	5	78	38	0	0	61	0.96
33795--33944	50	3.3	44	69	22	132	29	8	6	56	1.54
33775--33961	92	2.0	93	93	5	326	31	7	7	54	1.56
33977--34027	24	2.1	24	79	17	61	27	1	3	66	1.20
33989--34077	12	7.9	11	73	18	67	31	2	1	65	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34013--34078	3	23.0	3	72	20	52	31	1	0	66	1.01
33972--34077	35	3.2	33	78	16	103	30	1	1	66	1.13
34272--34502	127	1.8	125	84	6	311	36	9	8	45	1.67
36652--36711	27	2.3	27	85	2	86	21	13	6	58	1.58
36651--36678	12	2.3	12	100	0	56	25	14	7	53	1.66
38621--38683	13	4.6	13	82	9	63	87	0	12	0	0.55
38623--38683	14	4.4	14	83	10	54	86	0	13	0	0.56
38640--38677	1	38.0	1	100	0	76	100	0	0	0	0.00
43982--44386	112	3.6	112	86	4	559	37	15	19	28	1.92
44372--44423	24	2.2	24	96	0	95	42	9	25	23	1.84
43989--44910	221	4.0	221	74	13	670	37	14	18	28	1.91
44372--44432	24	2.5	24	89	5	79	44	8	26	21	1.80
44252--44535	137	2.1	136	86	3	394	39	14	20	26	1.91
44396--44895	112	4.5	113	84	7	603	38	14	18	28	1.90
44030--44759	361	2.0	357	87	3	1067	38	14	19	27	1.91
46693--46882	90	2.0	96	93	7	329	30	8	7	53	1.58
46927--46991	11	5.8	11	78	10	78	30	1	0	67	1.00
46891--46991	34	3.0	33	72	21	86	28	1	1	67	1.13
47391--47443	23	2.2	23	80	6	61	49	1	0	49	1.12
64073--64156	39	2.2	39	84	4	107	27	21	30	20	1.98
65882--65924	18	2.4	18	88	0	59	32	32	20	13	1.92
65892--65926	18	1.9	18	100	0	70	28	28	28	14	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65895--65934	18	2.2	18	86	0	53	37	27	20	15	1.92
67416--67508	20	4.7	20	84	5	116	27	23	20	27	1.99
67523--67563	19	2.0	20	86	9	57	24	21	21	31	1.98
67973--68015	19	2.2	20	91	4	70	32	25	4	37	1.77
70572--70605	3	11.3	3	100	0	68	0	32	0	67	0.91
77224--77259	18	1.9	19	88	5	56	30	5	11	52	1.59
77593--77634	20	2.1	20	100	0	84	28	9	19	42	1.82
77798--77837	19	2.1	19	90	9	64	52	2	0	45	1.14
78998--79101	53	2.0	53	100	0	208	38	16	25	20	1.92
79422--79493	35	2.1	35	91	0	117	22	16	22	38	1.93
81033--81168	60	2.3	60	80	5	150	37	12	11	38	1.80
101764--101820	20	2.7	20	75	8	51	33	26	15	24	1.95
124958--124990	16	2.0	17	88	5	50	30	6	30	33	1.82

Tables:   1

The End!