Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004527.1 Hibiscus syriacus cultivar Beakdansim tig00009990_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54328

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
647--677
1
31.0
1
93
0
53
96
0
3
0
0.21
702--758
17
3.3
17
73
9
53
75
3
15
5
1.12
5331--5362
11
2.9
11
100
0
64
25
28
9
37
1.87
5519--5564
24
1.9
23
82
8
56
45
4
13
36
1.63
8432--8554
38
3.3
37
69
23
96
33
22
8
35
1.84
8421--8578
75
2.1
75
85
4
212
32
21
9
36
1.86
8900--9400
131
3.9
128
77
10
403
35
14
17
32
1.91
8920--9489
131
4.4
126
74
8
371
34
14
16
33
1.90
10877--10914
2
19.5
2
94
5
69
47
0
0
52
1.00
11053--11116
4
16.2
4
96
3
121
25
0
25
50
1.50
15245--15296
22
2.4
22
100
0
104
34
7
17
40
1.78
15345--15405
20
3.0
20
77
17
70
44
11
16
27
1.82
19345--19398
24
2.2
24
96
0
99
27
9
3
59
1.45
21473--21521
24
2.0
24
84
0
62
57
10
6
26
1.55
45372--45400
6
4.8
6
100
0
58
17
0
0
82
0.66
46157--46197
10
4.1
10
84
12
57
31
29
0
39
1.57
46321--46542
111
2.0
111
91
0
363
37
7
9
45
1.66
48298--48341
15
2.9
15
79
0
52
31
15
34
18
1.92
52289--52318
15
2.0
15
93
0
51
50
0
0
50
1.00

Tables:   1

The End!