genome.fa.s4528.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004528.1 Hibiscus syriacus cultivar Beakdansim tig00009991_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64305

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5499--5775	140	2.0	137	97	2	527	32	12	11	42	1.79
8441--8470	2	15.0	2	100	0	60	50	0	0	50	1.00
24852--24902	21	2.5	20	87	9	75	35	21	13	29	1.92
24863--24903	21	2.0	21	100	0	82	34	24	14	26	1.94
24866--24910	21	2.1	21	91	0	72	35	24	17	22	1.95
24918--24965	21	2.3	21	85	0	60	31	8	20	39	1.82
25030--25057	14	2.0	14	100	0	56	42	14	21	21	1.88
25902--25949	24	2.0	24	95	0	87	43	20	22	12	1.86
26037--26078	22	1.9	22	90	0	66	26	19	19	35	1.95
34375--34524	76	2.0	76	90	0	237	30	26	22	22	1.99
41302--41340	20	2.0	20	89	0	60	28	20	17	33	1.96
41302--41826	119	4.4	119	90	0	818	31	15	18	34	1.92
41972--42064	17	5.4	17	71	21	68	43	2	1	53	1.19
41970--42054	3	28.3	3	72	13	68	40	2	1	56	1.20
43333--43389	27	2.0	27	83	12	71	36	3	3	56	1.34
45737--45761	8	3.1	8	100	0	50	24	0	0	76	0.80
45758--45799	9	4.4	9	91	8	66	2	9	0	88	0.61
45753--45799	19	2.4	19	86	13	69	6	8	0	85	0.75
45827--46618	263	3.0	256	81	7	859	36	14	13	35	1.86
58528--58944	89	4.7	89	77	5	356	25	16	17	40	1.90
58512--58834	134	2.4	134	82	4	357	25	15	19	39	1.91
58620--58943	134	2.4	134	78	5	314	26	15	16	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58515--58944	179	2.4	178	76	6	420	25	16	17	40	1.90
58591--58969	45	8.5	44	75	9	205	27	15	17	39	1.90
58952--59065	49	2.3	50	80	10	128	28	17	21	33	1.96
59695--60301	55	11.1	55	82	2	720	29	20	19	30	1.97
59695--60301	274	2.2	274	87	2	862	29	20	19	30	1.97
63465--63502	10	3.8	10	96	0	58	18	36	18	26	1.94

Tables:   1

The End!