genome.fa.s4529.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004529.1 Hibiscus syriacus cultivar Beakdansim tig00010001_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93917

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10--70	12	5.3	12	75	11	56	39	16	27	16	1.90
3978--4007	15	2.0	15	93	0	51	50	0	0	50	1.00
10508--10560	18	2.9	18	97	0	97	18	20	33	26	1.96
17181--17233	18	2.9	18	94	0	88	20	22	30	26	1.98
17185--17240	18	3.2	18	92	2	87	23	23	26	26	2.00
17919--17960	21	2.0	21	95	0	75	26	28	21	23	1.99
18140--18230	31	3.0	31	96	3	168	42	17	6	32	1.75
18947--19052	29	3.7	30	72	14	98	17	12	9	60	1.58
18954--19128	59	2.9	59	78	9	151	17	14	11	56	1.68
18999--19127	30	4.3	29	76	12	118	17	13	12	57	1.65
21568--21605	18	2.1	18	100	0	76	50	5	5	39	1.48
24003--24042	16	2.7	14	82	14	53	20	22	12	45	1.84
24010--24042	16	2.1	16	94	0	57	24	24	12	39	1.89
34123--34172	2	25.0	2	100	0	100	50	0	0	50	1.00
38505--38606	44	2.3	45	84	5	136	28	17	9	44	1.81
38809--38843	18	1.9	18	88	0	52	37	2	20	40	1.67
38827--38969	49	2.9	48	90	4	214	36	6	18	37	1.78
41527--41852	146	2.2	146	87	3	460	37	14	13	34	1.85
42723--43575	199	4.3	196	83	4	1088	39	15	11	34	1.83
43295--43332	20	1.9	20	94	0	67	36	10	7	44	1.68
41955--43511	768	2.0	764	80	6	1752	39	14	11	34	1.81
43754--44282	81	6.6	81	89	0	783	31	22	10	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44414--44530	55	2.1	55	82	3	137	37	19	9	33	1.84
44434--44537	55	1.9	55	87	0	154	35	17	11	35	1.86
50646--50809	37	4.6	37	72	17	123	41	7	4	46	1.53
50694--50803	31	3.3	32	77	10	96	40	8	4	47	1.54
50760--50857	43	2.2	42	82	10	108	42	10	3	43	1.54
51206--51586	201	1.9	201	85	3	525	26	18	19	35	1.95
53003--53190	98	1.9	98	80	2	216	34	19	12	33	1.89
58445--58519	39	1.9	40	91	5	127	48	10	1	40	1.46
58450--58521	12	5.5	13	68	15	51	47	11	1	40	1.48
66518--66608	29	2.9	31	68	22	82	43	6	7	41	1.59
72716--72754	16	2.8	13	79	20	51	30	0	0	69	0.89
72723--72754	15	2.1	16	94	5	57	28	0	0	71	0.86
72874--72920	24	2.0	23	87	4	67	53	0	0	46	1.00
72884--72963	28	2.9	27	78	10	65	52	0	2	45	1.14
73312--73343	14	2.2	15	94	5	57	53	0	6	40	1.26
73914--73955	10	4.2	10	85	11	59	33	28	0	38	1.58
74001--74034	18	1.9	18	94	5	61	29	2	2	64	1.22
74098--74430	111	3.0	111	96	0	603	36	8	10	44	1.69
76292--76357	9	7.3	9	78	0	60	34	18	31	15	1.92
79702--79813	51	2.2	50	81	9	120	24	28	30	16	1.97
81709--81898	96	2.0	96	85	2	256	42	17	12	27	1.85
85554--85831	138	2.0	140	98	1	542	32	12	11	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88476--88511	2	18.0	2	100	0	72	50	0	0	50	1.00

Tables:   1

The End!