Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000453.1 Hibiscus syriacus cultivar Beakdansim tig00000838_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77405

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
555--579
2
12.5
2
100
0
50
52
0
0
48
1.00
1188--1234
25
2.0
23
84
16
60
65
12
0
21
1.25
8212--8251
2
19.5
2
94
5
71
50
0
2
47
1.14
11027--11052
3
8.7
3
100
0
52
65
0
0
34
0.93
14732--14761
11
2.7
11
94
0
51
50
3
0
46
1.18
24296--24329
12
2.8
12
95
0
59
17
23
8
50
1.74
25677--25723
23
2.1
22
81
11
60
80
4
12
2
0.94
28586--28726
68
2.1
67
93
1
237
34
17
12
36
1.87
28931--29028
44
2.3
43
92
1
169
26
33
16
23
1.95
28791--29169
182
2.1
181
86
1
535
26
29
17
26
1.98
33701--33778
30
2.6
30
84
11
106
32
25
12
29
1.93
34245--34406
60
2.7
59
82
6
184
34
22
3
39
1.70
34453--34600
60
2.5
60
85
2
190
42
3
18
35
1.67
34494--34600
29
3.6
29
71
12
83
42
1
19
35
1.62
35180--35231
2
26.0
2
100
0
104
50
0
0
50
1.00
35893--36458
210
2.7
209
91
2
888
36
21
19
22
1.95
38617--38645
11
2.6
11
100
0
58
37
24
27
10
1.88
42773--43131
181
2.0
176
96
3
657
40
16
14
28
1.88
48435--48498
19
3.4
18
82
4
74
20
39
26
14
1.90
48435--48506
18
3.9
19
83
7
78
20
37
25
16
1.93
54611--54695
23
3.7
23
88
1
118
23
29
25
21
1.99
61821--61865
2
22.5
2
100
0
90
0
48
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71070--71251
48
3.8
48
82
8
237
39
14
21
24
1.91
71070--71251
95
1.9
96
87
5
271
39
14
21
24
1.91
72389--72515
43
2.9
43
84
1
146
35
14
23
25
1.94
74295--74355
23
2.7
23
78
0
77
31
22
26
19
1.98

Tables:   1

The End!