Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004530.1 Hibiscus syriacus cultivar Beakdansim tig00010004_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110998

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
439--509
21
3.5
21
92
3
110
22
15
22
39
1.92
10359--10398
20
2.0
20
85
5
53
47
0
7
45
1.31
10751--10795
6
7.5
6
94
0
81
2
17
46
33
1.61
10880--10950
21
3.4
21
66
11
56
35
29
16
18
1.93
10945--11002
22
2.6
22
97
0
107
18
18
29
32
1.96
10967--11330
20
17.8
20
75
9
171
18
21
19
40
1.92
11035--11226
40
4.7
40
83
5
249
21
24
17
36
1.94
11043--11226
83
2.2
83
97
0
341
21
25
16
36
1.94
11280--11330
19
2.6
20
90
3
77
15
17
23
43
1.88
11630--11676
24
2.0
24
83
4
60
40
2
2
55
1.24
11673--11722
26
2.0
25
84
4
64
38
4
2
56
1.30
12886--12925
20
2.0
21
85
5
55
70
0
0
30
0.88
12885--12938
26
2.1
26
83
13
67
66
0
0
33
0.92
18766--18840
38
2.0
37
82
10
91
46
5
1
46
1.33
24759--24798
2
20.0
2
100
0
80
50
0
0
50
1.00
26666--26692
13
2.1
13
100
0
54
48
14
0
37
1.45
26791--26817
13
2.1
13
100
0
54
44
7
7
40
1.60
36505--36565
20
2.9
20
85
7
68
18
22
34
24
1.96
44322--44358
19
2.1
18
90
10
58
45
5
10
37
1.62
55957--56055
3
33.0
3
82
8
121
60
2
1
36
1.15
56211--56814
54
11.2
54
84
2
698
21
26
19
31
1.98
57959--58005
13
3.8
13
86
11
71
2
17
0
80
0.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57965--58052
8
10.8
8
71
24
51
4
17
0
78
0.91
57978--58053
17
4.4
17
73
18
68
5
15
0
78
0.91
57959--58053
19
5.1
18
72
17
70
5
15
0
78
0.91
57966--58004
12
3.2
12
86
13
62
0
20
0
79
0.73
57996--58042
9
5.4
9
83
16
64
8
10
0
80
0.89
58011--58042
10
3.3
10
91
8
57
9
9
0
81
0.88
57959--58006
6
7.8
6
80
13
53
2
16
0
81
0.79
64712--64746
15
2.5
13
86
13
52
65
5
5
22
1.36
66106--66177
34
2.1
34
84
5
92
19
16
38
25
1.92
66297--66379
9
8.9
9
80
7
76
57
1
1
39
1.14
66302--66372
3
23.7
3
85
5
99
60
1
0
38
1.06
66732--66776
17
2.6
17
96
3
81
42
26
2
28
1.67
66778--66810
15
2.2
15
100
0
66
12
42
6
39
1.67
70371--70518
73
2.0
73
97
0
278
38
16
12
31
1.87
73734--73776
20
2.1
21
87
12
63
41
0
2
55
1.12
81250--81364
28
4.2
27
73
15
94
45
0
3
50
1.24
81214--81404
11
16.3
11
67
20
70
43
1
2
52
1.22
81267--81364
14
6.8
14
65
22
51
43
1
4
51
1.27
81222--81425
60
3.5
60
87
10
275
43
1
2
51
1.25
81415--81473
19
3.3
18
81
13
68
37
1
0
61
1.07
81396--81473
35
2.2
35
81
4
86
38
1
1
58
1.14
81414--81462
16
2.9
16
82
14
62
40
2
0
57
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83964--83997
17
2.1
16
88
5
50
44
0
2
52
1.16
84827--84862
2
18.0
2
100
0
72
50
0
0
50
1.00
88133--88173
10
4.1
10
84
12
57
31
29
0
39
1.57
88294--88514
111
2.0
110
95
0
397
35
8
11
44
1.72
89990--90025
18
2.0
18
100
0
72
27
27
22
22
1.99
90614--90698
35
2.5
33
76
14
82
24
8
10
56
1.60
93643--93720
23
3.4
23
91
1
122
26
25
29
17
1.98
93736--93950
101
2.1
103
90
4
348
37
21
13
27
1.91
95294--95353
20
2.9
21
90
7
95
18
26
25
30
1.98
104735--104782
3
16.7
3
82
8
64
37
2
0
60
1.09
104733--104780
11
4.3
11
84
5
69
37
2
0
60
1.09

Tables:   1

The End!