genome.fa.s4532.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004532.1 Hibiscus syriacus cultivar Beakdansim tig00010009_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81271

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2936--2975	21	1.9	21	89	0	62	30	10	10	50	1.69
3240--3288	20	2.5	20	100	0	98	24	24	24	26	2.00
3393--3485	21	4.4	21	97	0	168	23	32	24	19	1.98
7521--7560	21	1.9	21	89	0	62	30	10	10	50	1.69
9207--9242	16	2.1	18	90	10	58	47	8	5	38	1.57
11770--11809	21	1.9	21	89	0	62	30	10	7	52	1.62
16292--16391	21	4.7	21	80	11	123	22	37	19	22	1.95
18874--18917	17	2.5	17	92	3	70	68	6	25	0	1.14
20567--20606	21	1.9	21	89	0	62	30	10	10	50	1.69
20833--20927	21	4.5	22	78	10	99	21	34	18	25	1.96
21035--21085	21	2.4	21	96	0	93	23	33	23	19	1.97
24359--24821	59	7.8	59	81	6	412	36	11	21	30	1.89
24366--24926	177	3.2	174	78	10	473	36	11	21	29	1.89
24359--24956	118	5.0	114	79	10	385	36	12	21	29	1.90
24676--24910	60	3.9	60	91	2	357	36	13	20	29	1.91
24676--24956	120	2.3	119	82	10	326	37	12	19	29	1.89
25063--25319	44	6.0	44	86	6	357	40	7	18	33	1.78
25139--25212	37	2.0	37	97	0	139	40	6	18	33	1.77
25095--25319	81	2.7	83	86	5	292	39	7	19	33	1.80
25063--25310	125	2.0	124	88	3	363	41	6	18	33	1.76
28281--28328	22	2.1	22	81	11	53	31	6	4	58	1.42
28347--28399	19	2.8	18	75	8	52	37	1	3	56	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35821--35853	16	2.1	16	94	5	59	60	0	0	39	0.97
40163--40224	23	2.6	23	82	12	63	77	0	8	14	0.98
40182--40251	14	4.9	14	75	16	54	82	0	8	8	0.83
40179--40253	20	3.9	19	72	19	57	81	0	8	10	0.88
40195--40249	11	4.4	14	80	13	50	81	0	10	7	0.86
40205--40249	6	7.5	6	81	18	58	82	0	13	4	0.82
40223--40248	11	2.4	11	100	0	52	84	0	15	0	0.62
40399--40457	3	18.7	3	77	19	50	62	3	0	33	1.12
40419--40454	14	2.8	12	88	12	54	61	5	0	33	1.19
40399--40457	9	5.9	10	78	18	61	62	3	0	33	1.12
40682--40739	15	3.8	15	74	17	57	70	1	1	25	1.06
40682--40741	28	2.1	28	85	11	79	71	1	1	25	1.04
40685--40745	31	1.9	30	87	12	86	68	1	3	26	1.14
42665--43785	84	13.4	84	84	2	1357	23	18	23	34	1.96
44862--45115	94	2.6	94	86	5	323	30	18	17	33	1.94
50244--50285	11	3.7	11	87	6	57	73	2	0	23	0.94
50380--50418	17	2.3	17	91	8	62	71	7	0	20	1.10
50475--50501	12	2.2	12	100	0	54	74	0	0	25	0.83
53678--53707	14	2.1	14	93	0	51	0	16	0	83	0.65
53768--53807	11	3.7	11	87	12	57	0	0	15	85	0.61
53759--53815	21	2.6	22	76	15	64	1	3	12	82	0.87
58124--58247	61	2.0	61	95	0	221	17	27	21	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64180--64239	9	6.8	9	92	7	97	46	0	33	20	1.51
64285--64336	24	2.2	23	86	10	70	67	0	1	30	1.02
65518--65648	9	14.9	9	68	15	51	73	3	12	11	1.21
65525--65602	14	5.7	13	74	18	61	78	1	10	10	1.03
65519--65595	24	3.1	25	83	10	79	76	1	10	11	1.08
65528--65559	15	2.1	15	94	0	55	81	0	3	15	0.82
65533--65600	31	2.3	31	80	17	81	77	1	11	8	1.04
65563--65600	19	2.0	20	94	5	69	78	0	15	5	0.91
65557--65600	11	4.3	10	80	13	54	77	2	15	4	1.04
65533--65615	20	4.2	20	73	17	66	77	1	13	8	1.05
65557--65600	5	8.6	5	82	12	54	77	2	15	4	1.04
65751--65817	35	2.0	33	88	5	98	65	1	1	31	1.10
65769--65840	9	7.2	9	76	22	56	69	2	1	26	1.10
65762--65817	3	18.7	3	76	20	55	66	1	0	32	1.03
65807--65849	20	2.2	20	82	0	50	79	4	2	13	1.00
65991--66086	44	2.2	44	80	10	108	71	6	5	16	1.25
66167--66214	18	2.5	19	75	18	55	64	2	4	29	1.23
66273--66334	9	6.4	9	80	15	63	70	3	0	25	1.02
66274--66320	3	15.7	3	78	8	51	72	2	0	25	0.96
66269--66330	21	2.9	21	76	13	63	70	3	0	25	1.02
67531--67588	2	29.5	2	96	3	109	51	0	0	48	1.00
68533--68572	17	2.4	16	87	4	53	67	0	5	27	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69564--69748	88	2.1	88	98	0	361	22	7	34	35	1.82
69596--69774	88	2.0	88	82	6	218	27	5	30	36	1.80
70997--71140	55	2.6	55	96	0	261	26	15	24	34	1.95
71059--71627	121	4.7	122	81	6	629	24	14	24	36	1.93
70868--71573	242	2.9	241	83	6	785	24	14	24	36	1.93
71596--71954	64	5.6	64	91	1	569	30	13	21	35	1.91
75032--75066	14	2.5	14	100	0	70	60	5	11	22	1.52
75579--75620	17	2.5	17	88	3	59	64	0	7	28	1.20
76680--76716	14	2.4	17	82	17	53	67	0	0	32	0.91

Tables:   1

The End!