Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004533.1 Hibiscus syriacus cultivar Beakdansim tig00010011_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58205

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7657--7809
80
1.9
81
90
1
245
17
30
22
29
1.97
7927--8061
55
2.5
55
92
2
218
24
28
21
25
1.99
7930--8061
27
4.8
27
70
15
110
24
28
21
25
1.99
14819--14906
41
2.1
41
82
0
104
34
18
19
28
1.95
14839--15180
41
8.6
41
73
9
226
28
18
16
36
1.92
14946--15153
115
1.8
115
84
2
283
28
18
15
37
1.92
17258--17289
16
2.1
15
94
5
55
62
3
12
21
1.43
21947--21991
3
15.0
3
90
0
72
33
0
33
33
1.58
22176--22241
25
2.6
25
70
13
64
19
3
10
66
1.35
25473--25511
19
2.0
18
85
14
51
64
2
0
33
1.08
32234--32303
32
2.2
32
92
0
113
37
0
32
30
1.58
32370--32549
91
2.0
89
84
7
231
41
19
13
26
1.88
34427--34547
32
3.8
32
88
2
181
27
18
23
31
1.97
34847--34881
2
18.5
2
88
11
56
45
0
0
54
0.99
35259--35307
22
2.2
22
82
7
55
24
22
30
22
1.99
35328--35363
12
3.0
12
91
0
54
16
22
22
38
1.93
35331--35374
22
1.9
23
86
9
63
20
18
18
43
1.89
36007--36057
19
2.6
20
90
3
77
43
23
17
15
1.88
36007--36324
20
15.6
20
78
7
147
38
19
22
19
1.93
36132--36309
40
4.4
40
81
6
214
34
17
25
21
1.95
36152--36314
83
2.0
83
90
0
254
36
17
25
20
1.94
36111--36324
103
2.1
103
88
0
311
35
17
25
21
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36311--36354
20
2.2
20
91
0
70
54
15
18
11
1.70
36431--36498
6
11.5
6
98
1
129
32
51
16
0
1.45
37171--37280
6
18.5
6
99
0
213
0
16
50
32
1.45
37357--37400
20
2.2
20
91
0
70
11
18
15
54
1.70
37389--37563
20
8.6
20
83
3
179
22
24
15
38
1.92
37389--37563
40
4.3
40
86
4
251
22
24
15
38
1.92
37397--37580
83
2.2
83
95
0
332
22
24
15
36
1.93
37594--37647
20
2.7
20
94
0
90
11
18
18
51
1.74
37974--38039
27
2.4
27
90
5
98
4
54
3
37
1.36
39637--39812
60
2.9
60
79
8
180
34
5
26
32
1.80
40125--40159
5
7.0
5
100
0
70
80
0
0
20
0.72
40885--40970
24
3.6
24
83
10
88
45
19
13
20
1.85
40891--40987
47
2.1
46
80
5
106
45
18
13
22
1.84
41946--41998
19
2.8
19
97
0
97
11
49
20
18
1.78
42143--42187
18
2.4
18
82
10
56
62
0
33
4
1.15
43888--43929
22
1.9
22
95
0
75
33
23
19
23
1.97
44540--44590
19
2.7
19
93
0
84
25
25
19
29
1.99
47245--47276
2
16.5
2
93
6
57
50
0
0
50
1.00
48147--48192
2
23.0
2
95
0
83
50
0
2
47
1.13

Tables:   1

The End!