genome.fa.s4534.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004534.1 Hibiscus syriacus cultivar Beakdansim tig00010013_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83865

Tables:   1   

This is table  1  of  1  ( 111 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3824--3863	18	2.2	18	86	8	55	20	20	20	40	1.92
6499--6540	21	1.9	22	85	9	59	45	19	0	35	1.50
10454--10509	23	2.4	23	94	5	96	58	3	10	26	1.48
14585--14636	22	2.4	22	100	0	104	40	17	7	34	1.78
15059--15094	17	2.2	17	90	5	56	38	13	0	47	1.44
18589--18633	18	2.3	20	75	25	51	51	4	0	44	1.21
18578--18648	27	2.6	27	84	10	83	47	2	1	47	1.25
18828--18934	4	26.8	4	94	0	142	48	29	1	19	1.60
19037--19077	2	20.5	2	100	0	82	51	0	0	48	1.00
20484--21069	130	4.5	130	77	9	432	32	17	14	35	1.90
20515--21090	260	2.2	258	78	5	583	34	16	15	34	1.90
20472--21083	129	4.7	130	76	9	435	33	16	15	34	1.90
21443--21567	38	3.3	38	68	12	103	36	8	20	35	1.83
21400--21567	76	2.2	76	86	2	230	35	9	20	33	1.85
24655--24686	11	2.9	11	100	0	64	37	9	28	25	1.87
25218--25263	15	2.9	16	81	12	51	58	0	32	8	1.28
29379--29419	17	2.4	18	84	12	59	0	9	4	85	0.73
33130--33235	49	2.1	49	94	1	185	28	19	10	41	1.84
35031--35078	22	2.2	22	88	0	69	56	2	0	41	1.11
36107--36161	21	2.7	21	80	8	69	21	23	18	36	1.95
36151--36387	41	5.8	41	75	9	198	35	18	20	25	1.95
36136--36385	61	4.1	61	73	8	211	34	19	20	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36151--36387	20	11.6	20	75	7	183	35	18	20	25	1.95
36953--36997	19	2.4	19	88	0	63	51	26	13	8	1.70
36993--37105	19	6.1	19	74	13	101	13	23	18	45	1.84
37017--37080	34	1.9	34	87	3	94	12	23	20	43	1.85
39254--39320	21	3.2	21	66	6	55	23	35	20	19	1.95
39227--39320	42	2.2	42	81	7	102	22	35	21	21	1.96
40670--40706	14	2.6	15	87	12	60	32	0	21	45	1.52
40909--40954	19	2.4	19	81	0	56	50	23	10	15	1.75
40813--40931	33	3.6	33	84	1	148	50	20	18	10	1.76
40950--41047	19	5.7	19	65	22	72	15	21	20	42	1.88
40947--41046	33	3.0	33	86	4	148	18	21	20	41	1.91
43338--43374	12	3.1	12	92	0	65	0	24	0	75	0.80
43342--43374	15	2.2	15	94	0	57	0	24	0	75	0.80
44387--44438	20	2.5	21	81	3	61	38	17	21	23	1.93
44426--44505	20	4.0	20	73	9	54	35	21	18	25	1.96
44728--44772	20	2.3	20	96	3	83	33	26	24	15	1.95
46349--46440	42	2.2	42	86	1	132	21	15	41	21	1.90
46795--46839	20	2.3	20	80	3	56	40	20	22	17	1.92
46898--46991	33	2.8	33	93	0	143	13	19	20	46	1.83
46931--46991	19	3.5	19	74	21	78	14	19	19	45	1.85
46976--47019	20	2.3	19	84	11	54	20	25	18	36	1.95
47565--47612	18	2.7	18	93	0	87	14	12	45	27	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48932--48969	20	1.9	20	100	0	76	55	18	15	10	1.68
49246--49295	22	2.4	20	84	12	73	20	14	46	20	1.84
49252--49296	22	2.0	22	95	0	81	17	15	46	20	1.84
49489--49555	20	3.3	20	87	0	98	28	13	29	28	1.94
49590--49661	21	3.4	21	92	0	117	26	20	12	40	1.88
49590--49678	42	2.1	41	89	2	133	25	21	13	39	1.90
49601--49681	21	3.9	20	83	6	90	28	20	12	38	1.89
49774--49819	19	2.3	20	81	7	58	28	28	17	26	1.98
49854--49906	21	2.5	21	81	6	72	20	26	18	33	1.96
49899--49959	20	3.0	21	69	13	63	37	18	19	24	1.94
49920--50091	20	8.4	20	70	11	66	34	24	16	23	1.95
49896--50024	41	3.1	41	86	2	152	35	23	19	21	1.96
49896--49963	21	3.3	21	72	12	77	36	19	20	23	1.95
49954--50085	41	3.2	41	80	2	158	37	25	14	22	1.92
50258--50301	22	2.0	22	90	0	70	22	45	13	18	1.84
50579--50621	20	2.2	20	95	0	77	9	18	18	53	1.70
50758--50812	25	2.2	24	78	15	58	20	9	18	52	1.71
51943--51990	18	2.7	18	93	0	87	27	45	12	14	1.81
52525--52591	20	3.4	20	81	2	73	38	23	22	14	1.92
52525--52627	19	5.6	19	75	14	72	41	23	21	13	1.88
52680--52823	19	7.8	19	89	6	226	47	14	22	15	1.81
52850--52917	20	3.4	20	68	8	66	16	19	23	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53140--53218	20	3.9	20	83	5	79	27	21	20	30	1.98
53186--53241	20	2.8	21	83	8	71	25	21	16	37	1.93
53434--53467	12	2.9	12	86	4	52	17	41	5	35	1.74
54022--54075	24	2.2	24	83	6	65	24	18	18	38	1.93
54250--54274	12	2.1	12	100	0	50	72	0	28	0	0.86
56569--56691	33	3.7	33	85	4	167	44	19	21	14	1.86
56606--56695	19	5.3	19	62	24	56	43	20	23	13	1.86
56566--56697	66	2.0	66	93	0	228	43	19	21	15	1.88
56691--56732	19	2.2	19	86	0	57	16	19	26	38	1.92
56699--56767	19	3.9	19	76	21	78	11	17	24	46	1.81
56706--56799	33	2.8	33	90	3	136	11	20	22	45	1.83
56741--56799	19	3.4	19	71	22	65	13	22	18	45	1.84
56906--56942	14	2.6	14	91	0	65	45	24	0	29	1.53
58291--58357	21	3.2	21	68	4	55	19	20	35	23	1.95
58291--58413	42	2.9	41	78	7	104	23	18	35	21	1.95
58631--58813	91	2.0	93	89	6	284	48	18	11	21	1.79
60501--60646	33	4.1	37	74	16	112	43	19	23	13	1.86
60501--60646	19	8.1	19	72	17	123	43	19	23	13	1.86
60509--60646	52	2.6	52	87	2	186	42	21	23	13	1.87
60657--60708	19	2.7	20	78	3	70	11	17	23	48	1.79
61227--61338	20	5.6	20	81	4	73	22	20	19	37	1.94
61224--61464	41	5.9	41	75	10	172	27	19	18	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61247--61461	61	3.5	60	75	9	184	26	20	18	35	1.95
61451--61503	21	2.5	22	81	6	74	33	18	26	20	1.96
61707--61733	2	13.5	2	100	0	54	51	0	0	48	1.00
62786--62812	2	13.5	2	100	0	54	51	0	0	48	1.00
63087--63131	22	1.9	23	86	13	65	62	6	15	15	1.52
65950--65991	17	2.5	17	96	0	75	16	16	19	47	1.83
69218--69250	2	16.5	2	100	0	66	51	0	0	48	1.00
69408--69472	13	5.0	13	86	0	76	32	15	21	30	1.94
69272--69432	84	1.9	84	83	5	209	29	17	19	33	1.95
69408--69472	26	2.5	26	84	0	85	32	15	21	30	1.94
70421--70456	18	2.1	18	94	5	65	38	13	27	19	1.90
73861--73937	34	2.3	34	93	0	127	25	12	32	28	1.93
75313--75377	31	2.1	31	82	5	78	55	9	15	20	1.67
76014--76088	19	3.9	19	98	0	141	32	30	16	21	1.95
76161--76357	21	9.3	21	70	11	107	38	20	16	23	1.93
76195--76262	20	3.3	20	75	4	82	36	26	14	22	1.93
76193--76335	41	3.4	41	85	9	196	38	23	16	22	1.93
76198--76332	46	3.0	46	89	5	199	37	23	16	22	1.93
76223--76356	21	6.2	21	72	8	117	40	21	16	21	1.91
76359--76408	21	2.5	19	84	12	73	24	24	22	30	1.99
76367--76417	21	2.4	21	96	0	93	19	23	27	29	1.98
77111--77167	19	3.0	19	94	0	96	36	26	5	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80948--81027	41	2.0	41	90	5	126	35	22	15	27	1.94

Tables:   1

The End!