Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004535.1 Hibiscus syriacus cultivar Beakdansim tig00010014_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 69438
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Found at i:13987 original size:3 final size:3
Alignment explanation
Indices: 13974--14023 Score: 82
Period size: 3 Copynumber: 16.7 Consensus size: 3
13964 GTAAAAATGC
* *
13974 AAT ATT AAT AAT AAT AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
14022 AA
1 AA
14024 AATTATATTA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:14255 original size:43 final size:40
Alignment explanation
Indices: 14187--14301 Score: 119
Period size: 38 Copynumber: 2.9 Consensus size: 40
14177 TTGGTTGTTG
* * *
14187 GGGACGACACTGCTCATACTTGATGAAGAGTTCGAGTCGTCTAA
1 GGGATGACACTGCTCATACGTGATGAAGAGTTC---TAGTC-AA
* * *
14231 GGG-TGACACAGCTCCTACGTGATG-AG-GATCTAGTCAA
1 GGGATGACACTGCTCATACGTGATGAAGAGTTCTAGTCAA
14268 GGGATGACACTGCTCATACGTGATGAAGAGTTCT
1 GGGATGACACTGCTCATACGTGATGAAGAGTTCT
14302 TGACAATCTT
Statistics
Matches: 59, Mismatches: 9, Indels: 10
0.76 0.12 0.13
Matches are distributed among these distances:
37 5 0.08
38 23 0.39
39 2 0.03
40 4 0.07
41 3 0.05
42 2 0.03
43 17 0.29
44 3 0.05
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (40 bp):
GGGATGACACTGCTCATACGTGATGAAGAGTTCTAGTCAA
Found at i:14399 original size:43 final size:43
Alignment explanation
Indices: 14333--14534 Score: 119
Period size: 43 Copynumber: 4.6 Consensus size: 43
14323 ATAACTCGGT
*
14333 TCCTACGCGATGAGGA-CTACTGGTTATCTATGGGTGACACGGC
1 TCCTACGTGATGAGGAGCT-CTGGTTATCTATGGGTGACACGGC
* **
14376 TCCTACGTGATGAGGAGGTCTGG---TC-GGGGGATGACACGGC
1 TCCTACGTGATGAGGAGCTCTGGTTATCTATGGG-TGACACGGC
* * * ** * * *
14416 TCATACGTGATGAAGAGTTCTTGGCCATCTTTAGGAAGGGTGATAATTCGGT
1 TCCTACGTGATGAGGAGCTC-TGGTTATC--T---ATGGGTGA-CA--CGGC
* *
14468 TCCTACGCGATGAGGA-CTGCTGGTTATCTATGGGTAACACGGC
1 TCCTACGTGATGAGGAGCT-CTGGTTATCTATGGGTGACACGGC
*
14511 TCCTACGTGATGAGGAGGTCTGGT
1 TCCTACGTGATGAGGAGCTCTGGT
14535 CGGGGGATGA
Statistics
Matches: 119, Mismatches: 23, Indels: 34
0.68 0.13 0.19
Matches are distributed among these distances:
39 3 0.03
40 28 0.24
41 3 0.03
43 42 0.35
44 4 0.03
45 1 0.01
46 6 0.05
49 4 0.03
50 4 0.03
51 7 0.06
52 17 0.14
ACGTcount: A:0.21, C:0.19, G:0.33, T:0.27
Consensus pattern (43 bp):
TCCTACGTGATGAGGAGCTCTGGTTATCTATGGGTGACACGGC
Found at i:14697 original size:134 final size:135
Alignment explanation
Indices: 14226--14669 Score: 714
Period size: 135 Copynumber: 3.3 Consensus size: 135
14216 GTTCGAGTCG
* * * * ** *
14226 TCTAAGGGTGACACAGCTCCTACGTGATGAGGA--TCTAGTCAAGGGATGACACTGCTCATACGT
1 TCTATGGGTAACACGGCTCCTACGTGATGAGGAGGTCTGGTCGGGGGATGACACGGCTCATACGT
* * *
14289 GATGAAGAGTTCTTGACAATCTTTAGGAAGGGTGATAACTCGGTTCCTACGCGATGAGGACTACT
66 GATGAAGAGTTCTTGGCCATCTTTAGGAAGGGTGATAACTCGGTTCCTACGCGATGAGGACTGCT
14354 GGTTA
131 GGTTA
*
14359 TCTATGGGTGACACGGCTCCTACGTGATGAGGAGGTCTGGTCGGGGGATGACACGGCTCATACGT
1 TCTATGGGTAACACGGCTCCTACGTGATGAGGAGGTCTGGTCGGGGGATGACACGGCTCATACGT
*
14424 GATGAAGAGTTCTTGGCCATCTTTAGGAAGGGTGATAATTCGGTTCCTACGCGATGAGGACTGCT
66 GATGAAGAGTTCTTGGCCATCTTTAGGAAGGGTGATAACTCGGTTCCTACGCGATGAGGACTGCT
14489 GGTTA
131 GGTTA
14494 TCTATGGGTAACACGGCTCCTACGTGATGAGGAGGTCTGGTCGGGGGATGACACGGCTCATACGT
1 TCTATGGGTAACACGGCTCCTACGTGATGAGGAGGTCTGGTCGGGGGATGACACGGCTCATACGT
* *
14559 GATGAAGAGTT-ATGGCCATCTTTAGGAAGGGTGATAACTCGGTTCCTACGCGATGAGGACGGCT
66 GATGAAGAGTTCTTGGCCATCTTTAGGAAGGGTGATAACTCGGTTCCTACGCGATGAGGACTGCT
14623 GGTTA
131 GGTTA
* * *
14628 TCTATGGTTAACACGGCTCCTACGCGGTGAGGAGGTCTGGTC
1 TCTATGGGTAACACGGCTCCTACGTGATGAGGAGGTCTGGTC
14670 AAAGGATGAC
Statistics
Matches: 292, Mismatches: 17, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
133 31 0.11
134 94 0.32
135 167 0.57
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (135 bp):
TCTATGGGTAACACGGCTCCTACGTGATGAGGAGGTCTGGTCGGGGGATGACACGGCTCATACGT
GATGAAGAGTTCTTGGCCATCTTTAGGAAGGGTGATAACTCGGTTCCTACGCGATGAGGACTGCT
GGTTA
Found at i:14890 original size:66 final size:64
Alignment explanation
Indices: 14726--14882 Score: 165
Period size: 66 Copynumber: 2.4 Consensus size: 64
14716 AGGGACTTTG
* *
14726 GTTTCAAGGGAAACTGA-CTCAAAGATTATGTTTAAAGGAAACTATCTCAAACGGGACAAAATTT
1 GTTTCAAGGGAAAC-GATCTCAAAGATTATGTTTAAAGGAAACTATCTCAAACGAGACAAAATTC
* * ** * * *
14790 GTTTTTAAGGGAAAC-ATTCTCAAAGATCAGTGTTTCATGGGAAACTGTCTCAAATGAGAGAAAA
1 G-TTTCAAGGGAAACGA-TCTCAAAGATTA-TGTTT-AAAGGAAACTATCTCAAACGAGACAAAA
14854 TTC
62 TTC
*
14857 GTTTCAAGGGAAACGATCTTAAAGAT
1 GTTTCAAGGGAAACGATCTCAAAGAT
14883 GTTTGTTTTG
Statistics
Matches: 76, Mismatches: 11, Indels: 10
0.78 0.11 0.10
Matches are distributed among these distances:
63 1 0.01
64 1 0.01
65 22 0.29
66 26 0.34
67 26 0.34
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.28
Consensus pattern (64 bp):
GTTTCAAGGGAAACGATCTCAAAGATTATGTTTAAAGGAAACTATCTCAAACGAGACAAAATTC
Found at i:15004 original size:65 final size:62
Alignment explanation
Indices: 14921--15065 Score: 146
Period size: 65 Copynumber: 2.2 Consensus size: 62
14911 CAAAGATGGT
* * *
14921 AAATTTTGTTTCCAAAGAAACAGACTCAAAGATTTTTCTTTAAAGAAACTATCTCAAAAGAGATA
1 AAATTTT-TTTTCAAAGAAACAGACTCAAAGATTTTTC--AAAAGAAACTATCTCAAAAGAGACA
* * * * * * *
14986 AAATTTTCTTTTCAAAGAAATATATTCAATGATTTTTCAAAAGAAATTGTCTCAAGAGAGACA
1 AAATTTT-TTTTCAAAGAAACAGACTCAAAGATTTTTCAAAAGAAACTATCTCAAAAGAGACA
15049 AAACTTTGTTTTTCAAA
1 AAA-TTT-TTTTTCAAA
15066 AAATTGTATC
Statistics
Matches: 67, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
63 23 0.34
64 11 0.16
65 33 0.49
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.34
Consensus pattern (62 bp):
AAATTTTTTTTCAAAGAAACAGACTCAAAGATTTTTCAAAAGAAACTATCTCAAAAGAGACA
Found at i:15095 original size:38 final size:39
Alignment explanation
Indices: 15018--15097 Score: 110
Period size: 38 Copynumber: 2.1 Consensus size: 39
15008 TATTCAATGA
*
15018 TTTTTCAAAAGAAATTGTCTCAAGAGAGACAAAACTTTG
1 TTTTTCAAAAGAAATTGTATCAAGAGAGACAAAACTTTG
* *
15057 TTTTTC-AAA-AAATTGTATCTAAGTGAGACAAAATTTTG
1 TTTTTCAAAAGAAATTGTATC-AAGAGAGACAAAACTTTG
15095 TTT
1 TTT
15098 CCAAAGAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 9 0.24
38 22 0.59
39 6 0.16
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.38
Consensus pattern (39 bp):
TTTTTCAAAAGAAATTGTATCAAGAGAGACAAAACTTTG
Found at i:15407 original size:30 final size:30
Alignment explanation
Indices: 15321--15403 Score: 87
Period size: 30 Copynumber: 2.8 Consensus size: 30
15311 AAACAAAATT
* * * * * *
15321 TGTTTTAATAGAAACGATCTCAAAGGTGGG
1 TGTTTCAAAAGAAACTAACTCAAAGATAGG
*
15351 TGTTTCAAGAGAAACTAACTCAAAGATAGG
1 TGTTTCAAAAGAAACTAACTCAAAGATAGG
*
15381 TGTTTCAAAAGAAA-TGACTCAAA
1 TGTTTCAAAAGAAACTAACTCAAA
15404 AGATTTTTTC
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
29 8 0.18
30 37 0.82
ACGTcount: A:0.41, C:0.12, G:0.20, T:0.27
Consensus pattern (30 bp):
TGTTTCAAAAGAAACTAACTCAAAGATAGG
Found at i:15844 original size:36 final size:36
Alignment explanation
Indices: 15707--15832 Score: 182
Period size: 36 Copynumber: 3.5 Consensus size: 36
15697 ATAATTTGGA
*
15707 AAATTGTCTCAAGTGAGACAACATTTGTTTTTAGAG
1 AAATTGTCTCAAGTGAGACAAAATTTGTTTTTAGAG
** *
15743 AAATTGTCTCAAACGAGACAAAAATTGTTTTTAGAG
1 AAATTGTCTCAAGTGAGACAAAATTTGTTTTTAGAG
15779 AAATTGTCTCAAGTGAGACAAAATTTGTTTTT-GAG
1 AAATTGTCTCAAGTGAGACAAAATTTGTTTTTAGAG
**
15814 AAAACGATCTCAAGTGAGA
1 AAATTG-TCTCAAGTGAGA
15833 TCAACTTTGT
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
35 7 0.09
36 73 0.91
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (36 bp):
AAATTGTCTCAAGTGAGACAAAATTTGTTTTTAGAG
Found at i:16445 original size:4 final size:4
Alignment explanation
Indices: 16436--17840 Score: 2747
Period size: 4 Copynumber: 353.5 Consensus size: 4
16426 TTCATGTGTC
16436 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
16484 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
16532 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
16580 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
16628 ATGT ATGT A--T ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
16674 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
16722 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A--T
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
16768 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
16816 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
16864 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
16912 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
16960 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
17008 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
17056 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
17104 ATGT ATGT ATGT ATGT ATGT ATGT ATGT A--T ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
17150 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A-GT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
17197 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
17245 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
17293 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
17341 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
17389 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
17437 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
17485 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
17533 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
17581 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
17629 ATGT ATG- -TGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
17675 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
17723 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
17771 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
17819 ATGT ATGT ATGT ATGT ATGT AT
1 ATGT ATGT ATGT ATGT ATGT AT
17841 TGATATATGT
Statistics
Matches: 1392, Mismatches: 0, Indels: 18
0.99 0.00 0.01
Matches are distributed among these distances:
2 8 0.01
3 3 0.00
4 1381 0.99
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:19067 original size:14 final size:14
Alignment explanation
Indices: 19023--19105 Score: 80
Period size: 14 Copynumber: 5.8 Consensus size: 14
19013 CTTTGTCCCC
*
19023 TTTTTGTTCTTTGA
1 TTTTTTTTCTTTGA
* *
19037 TTTTCCTTTCGTT-A
1 TTTT-TTTTCTTTGA
19051 TTTTTTTTCTTTGA
1 TTTTTTTTCTTTGA
19065 TTTTTTTCTCTTTG-
1 TTTTTTT-TCTTTGA
*
19079 TTTCTTTTTCTTTGC
1 TTT-TTTTTCTTTGA
19094 TTTTTTTCTCTT
1 TTTTTTT-TCTT
19106 CGCTCTTTAT
Statistics
Matches: 58, Mismatches: 5, Indels: 11
0.78 0.07 0.15
Matches are distributed among these distances:
13 6 0.10
14 30 0.52
15 22 0.38
ACGTcount: A:0.04, C:0.14, G:0.07, T:0.75
Consensus pattern (14 bp):
TTTTTTTTCTTTGA
Found at i:19086 original size:28 final size:29
Alignment explanation
Indices: 19029--19105 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 29
19019 CCCCTTTTTG
* *
19029 TTCTTTGATTTTCCTT-TCGTTATTT-TTT
1 TTCTTTGATTTT-TTTCTCTTTATTTCTTT
*
19057 TTCTTTGATTTTTTTCTCTTTGTTTCTTT
1 TTCTTTGATTTTTTTCTCTTTATTTCTTT
*
19086 TTCTTTGCTTTTTTTCTCTT
1 TTCTTTGATTTTTTTCTCTT
19106 CGCTCTTTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
27 2 0.05
28 19 0.44
29 22 0.51
ACGTcount: A:0.04, C:0.16, G:0.06, T:0.74
Consensus pattern (29 bp):
TTCTTTGATTTTTTTCTCTTTATTTCTTT
Found at i:19151 original size:31 final size:31
Alignment explanation
Indices: 19084--19165 Score: 94
Period size: 31 Copynumber: 2.6 Consensus size: 31
19074 CTTTGTTTCT
* *
19084 TTTTCTTTGCTTTTTTTCTCTTCGCTCTTTAT
1 TTTTCTTTG-TTTTTTTCTATTCGCTCTTTAC
* *
19116 TTTTCTTTGTTGTTTTT-TATTTGCTCTTTGC
1 TTTTCTTTGTT-TTTTTCTATTCGCTCTTTAC
19147 TTTTCTTTGTTTCTTTTCT
1 TTTTCTTTGTTT-TTTTCT
19166 CTTTGTTTTG
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
30 1 0.02
31 27 0.63
32 15 0.35
ACGTcount: A:0.02, C:0.17, G:0.09, T:0.72
Consensus pattern (31 bp):
TTTTCTTTGTTTTTTTCTATTCGCTCTTTAC
Found at i:19169 original size:46 final size:46
Alignment explanation
Indices: 19055--19173 Score: 118
Period size: 46 Copynumber: 2.6 Consensus size: 46
19045 TCGTTATTTT
* * *
19055 TTTTCTTTGATTTTTTTCTCTTTGTTTCTTTTTCTTTGCTTTTTTTC
1 TTTTCTTTG-TTTTTTTCTCTTTGTTTCTTTTTATTTGCTTCTTTGC
* ** *
19102 TCTTCGCTCTTTATTTT-TCTTTGTTGT-TTTTTATTTGC-TCTTTGC
1 TTTTCTTTGTTT-TTTTCTCTTTGTT-TCTTTTTATTTGCTTCTTTGC
19147 TTTTCTTTGTTTCTTTTCTCTTTGTTT
1 TTTTCTTTGTTT-TTTTCTCTTTGTTT
19174 TGATTTGATC
Statistics
Matches: 57, Mismatches: 12, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
45 18 0.32
46 29 0.51
47 10 0.18
ACGTcount: A:0.03, C:0.16, G:0.08, T:0.73
Consensus pattern (46 bp):
TTTTCTTTGTTTTTTTCTCTTTGTTTCTTTTTATTTGCTTCTTTGC
Found at i:20417 original size:19 final size:20
Alignment explanation
Indices: 20395--20432 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
20385 TTAAAAATTT
20395 AAATGCAGATGC-AAAATGC
1 AAATGCAGATGCTAAAATGC
*
20414 AAATGCATATGCTAAAATG
1 AAATGCAGATGCTAAAATG
20433 TTGATCCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.47, C:0.13, G:0.18, T:0.21
Consensus pattern (20 bp):
AAATGCAGATGCTAAAATGC
Found at i:23006 original size:30 final size:30
Alignment explanation
Indices: 22966--23086 Score: 97
Period size: 30 Copynumber: 4.1 Consensus size: 30
22956 GCTAAACCAA
*
22966 AAAAATAGAAAATTAGAGGACTAAAATAGT
1 AAAAACAGAAAATTAGAGGACTAAAATAGT
** * * * *
22996 AATTACAGAAACTTAGGGGGCTAAAATAGC
1 AAAAACAGAAAATTAGAGGACTAAAATAGT
23026 ACAAAACA-AAAATCTA-AGGACTAAAATAAG-
1 A-AAAACAGAAAAT-TAGAGGACTAAAAT-AGT
* * *
23056 AAAAACATAAATTTAAAGGACT-AAATAGT
1 AAAAACAGAAAATTAGAGGACTAAAATAGT
23085 AA
1 AA
23087 TTACGAAACA
Statistics
Matches: 72, Mismatches: 13, Indels: 13
0.73 0.13 0.13
Matches are distributed among these distances:
28 2 0.03
29 14 0.19
30 48 0.67
31 8 0.11
ACGTcount: A:0.57, C:0.09, G:0.15, T:0.19
Consensus pattern (30 bp):
AAAAACAGAAAATTAGAGGACTAAAATAGT
Found at i:23875 original size:18 final size:18
Alignment explanation
Indices: 23854--23888 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23844 CACTTAAAAA
* *
23854 CTTTGAAACCCTTAACCC
1 CTTTCAAACCCTAAACCC
23872 CTTTCAAACCCTAAACC
1 CTTTCAAACCCTAAACC
23889 AAAGATGATG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.40, G:0.03, T:0.26
Consensus pattern (18 bp):
CTTTCAAACCCTAAACCC
Found at i:24551 original size:3 final size:3
Alignment explanation
Indices: 24538--24588 Score: 84
Period size: 3 Copynumber: 17.0 Consensus size: 3
24528 GTAAAAATGC
* *
24538 AAT ATT AAT AAT AAT AAT AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
24586 AAT
1 AAT
24589 TAAATTAAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:29518 original size:2 final size:2
Alignment explanation
Indices: 29511--29591 Score: 162
Period size: 2 Copynumber: 40.5 Consensus size: 2
29501 CATTTGAATT
29511 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
29553 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
29592 GGATTATGAT
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 79 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:31566 original size:3 final size:3
Alignment explanation
Indices: 31558--31615 Score: 84
Period size: 3 Copynumber: 20.0 Consensus size: 3
31548 CCTCAATTTT
* *
31558 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT- ATA ATT GTA AT- ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
31604 ATA ATA ATA ATA
1 ATA ATA ATA ATA
31616 TATAGTCTCG
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
2 4 0.08
3 45 0.92
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:31787 original size:20 final size:20
Alignment explanation
Indices: 31764--31812 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
31754 TCCTACCCAG
* *
31764 AGGTTTTACAGATGACCCGA
1 AGGTTTTACAAATCACCCGA
*
31784 AGGTTTTACAAATCACCCGG
1 AGGTTTTACAAATCACCCGA
31804 AGGATTTTA
1 AGG-TTTTA
31813 ATTTTCTAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 20 0.80
21 5 0.20
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (20 bp):
AGGTTTTACAAATCACCCGA
Found at i:31925 original size:20 final size:20
Alignment explanation
Indices: 31877--31931 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 20
31867 AAAAACATCC
* *
31877 TACCCTGAGGTTTTACATAT
1 TACCCGGAGGTTTTACAAAT
* * *
31897 GAACGGGAGGTTTTACAAAT
1 TACCCGGAGGTTTTACAAAT
*
31917 TACCCGGAGGATTTA
1 TACCCGGAGGTTTTA
31932 ATTTGTAGAA
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (20 bp):
TACCCGGAGGTTTTACAAAT
Found at i:31999 original size:118 final size:120
Alignment explanation
Indices: 31747--32034 Score: 438
Period size: 118 Copynumber: 2.4 Consensus size: 120
31737 AATCAAAAAT
* *
31747 AAAAACATCCTACCCAGAGGTTTTACAGATGACCCGAAGGTTTTACAAATCACCCGGAGGATTTT
1 AAAAACATCCTACCCTGAGGTTTTACAGATGACCCGGAGGTTTTACAAATCACCCGGAGGATTTT
31812 AATTTTCTAGAACATTAAATGAGAAACTTTGAAAATCGCTTTATCATTTTCATGA
66 AATTTTCTAGAACATTAAATGAGAAACTTTGAAAATCGCTTTATCATTTTCATGA
* * * *
31867 AAAAACATCCTACCCTGAGGTTTTACATATGAACGGGAGGTTTTACAAATTACCCGGAGGA-TTT
1 AAAAACATCCTACCCTGAGGTTTTACAGATGACCCGGAGGTTTTACAAATCACCCGGAGGATTTT
* * * *
31931 AA-TTTGTAGAACATTAAATGAGAAACTTTGAAAATTGCTTTCTCATTTTCATGC
66 AATTTTCTAGAACATTAAATGAGAAACTTTGAAAATCGCTTTATCATTTTCATGA
* * *
31985 GAAAACATCATACCCTGAGGTTTTATAGATGACCCGGA-GTTTTACAAATC
1 AAAAACATCCTACCCTGAGGTTTTACAGATGACCCGGAGGTTTTACAAATC
32035 TGTGAACATT
Statistics
Matches: 151, Mismatches: 17, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
117 11 0.07
118 80 0.53
119 5 0.03
120 55 0.36
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (120 bp):
AAAAACATCCTACCCTGAGGTTTTACAGATGACCCGGAGGTTTTACAAATCACCCGGAGGATTTT
AATTTTCTAGAACATTAAATGAGAAACTTTGAAAATCGCTTTATCATTTTCATGA
Found at i:32054 original size:99 final size:100
Alignment explanation
Indices: 31939--32134 Score: 349
Period size: 99 Copynumber: 2.0 Consensus size: 100
31929 TTAATTTGTA
*
31939 GAACATTAAATGAGAAACTTTGAAAATTGCTTTCTCATTTTCATGCGAAAACATCATACCCTGAG
1 GAACATTAAATGAGAAACTTTGAAAATCGCTTTCTCATTTTCATGCGAAAACATCATACCCTGAG
* *
32004 GTTTTATAGATGACCCGGA-GTTTTACAAATCTGT
66 GTTTTACAGATGACCCGGAGGTTTAACAAATCTGT
*
32038 GAACATTAAATGAGAAACTTTGAAAATCGCTTTCTCATTTTCATGCGAAAACATCCTACCCTGAG
1 GAACATTAAATGAGAAACTTTGAAAATCGCTTTCTCATTTTCATGCGAAAACATCATACCCTGAG
32103 GTTTTACAGATGACCCGGAGGTTTAACAAATC
66 GTTTTACAGATGACCCGGAGGTTTAACAAATC
32135 AAGAAACCCT
Statistics
Matches: 92, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
99 81 0.88
100 11 0.12
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (100 bp):
GAACATTAAATGAGAAACTTTGAAAATCGCTTTCTCATTTTCATGCGAAAACATCATACCCTGAG
GTTTTACAGATGACCCGGAGGTTTAACAAATCTGT
Found at i:42144 original size:12 final size:12
Alignment explanation
Indices: 42127--42151 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
42117 GGGGTTTAAA
42127 AGAGAAGAATTG
1 AGAGAAGAATTG
42139 AGAGAAGAATTG
1 AGAGAAGAATTG
42151 A
1 A
42152 TGATTTTCGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.32, T:0.16
Consensus pattern (12 bp):
AGAGAAGAATTG
Found at i:42224 original size:19 final size:20
Alignment explanation
Indices: 42185--42224 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
42175 TTTCTGGGCT
42185 ATGTGTATCGATGCACATTCA
1 ATGTGTATCGATG-ACATTCA
42206 ATGTGTATCGATG-CATTCA
1 ATGTGTATCGATGACATTCA
42225 CAAATAAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.32
21 13 0.68
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (20 bp):
ATGTGTATCGATGACATTCA
Found at i:45724 original size:3 final size:3
Alignment explanation
Indices: 45716--45763 Score: 64
Period size: 3 Copynumber: 16.7 Consensus size: 3
45706 CTCAGTTTTG
**
45716 TAA TAA TAA TAA TAA TAA TAA T-A TAA TTG TAA T-A TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
45762 TA
1 TA
45764 TATAGTTTCG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
2 4 0.10
3 35 0.90
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:55297 original size:22 final size:21
Alignment explanation
Indices: 55245--55304 Score: 95
Period size: 20 Copynumber: 2.9 Consensus size: 21
55235 GATTTCTGGG
55245 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAATCGGTACCCATT
55266 CAA-GGGAATCGGTACCCATT
1 CAAGGGGAATCGGTACCCATT
*
55286 CAATGGGGAATCGATACCC
1 CAA-GGGGAATCGGTACCC
55305 CTCAAGCGAA
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
20 20 0.56
21 3 0.08
22 13 0.36
ACGTcount: A:0.30, C:0.25, G:0.27, T:0.18
Consensus pattern (21 bp):
CAAGGGGAATCGGTACCCATT
Found at i:55382 original size:23 final size:22
Alignment explanation
Indices: 55338--55382 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
55328 AATCTCATAG
*
55338 GGGAACCGATTCCCCCACAGGA
1 GGGAACCGATTCCCCCAAAGGA
*
55360 GGGAATCGATTCCCCCTAAAGGA
1 GGGAACCGATTCCCCC-AAAGGA
55383 AAAATGTGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.29, C:0.31, G:0.27, T:0.13
Consensus pattern (22 bp):
GGGAACCGATTCCCCCAAAGGA
Found at i:56893 original size:103 final size:103
Alignment explanation
Indices: 56668--56885 Score: 400
Period size: 103 Copynumber: 2.1 Consensus size: 103
56658 GTCGAGGGTC
*
56668 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATATGTGAAGTCTGGTGAGACACATAC
* *
56733 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGCATATGTATATGATTCTTAAGGAATGA
56771 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATATGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATATGTGAAGTCTGGTGAGACACATAC
*
56836 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGCATATGTATATGATTCTTAAGGAATGA
56874 TATGTGGTCCTT
1 TATGTGGTCCTT
56886 ATGGACATTA
Statistics
Matches: 111, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 111 1.00
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.37
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATATGTGAAGTCTGGTGAGACACATAC
TTGATCCCTAGCATATGTATATGATTCTTAAGGAATGA
Found at i:56935 original size:23 final size:23
Alignment explanation
Indices: 56902--56969 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 23
56892 ATTATTATAT
56902 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* * *
56925 GGCACTCCGGTACAATTCTACGT
1 GGCACTACGGTGCAATTCTACGC
* *
56948 GGCACTTCGGTGCAATTATACG
1 GGCACTACGGTGCAATTCTACG
56970 AGCTGTGGTG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:62384 original size:111 final size:111
Alignment explanation
Indices: 62190--62411 Score: 392
Period size: 111 Copynumber: 2.0 Consensus size: 111
62180 ATTACAAAAA
* *
62190 TTAATTCTTAATCTAATAATCATGCATTAAATGAATCAACTAATTATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTA
*
62255 AATTAAAACATTAAAATGTTACCGTATTAGCAAAGTGTCGAGATAT
66 AATTAAAACATTAAAATGTTACCGTATTAGCAAAGTGTAGAGATAT
62301 TTAATTCTTAATCTAATAATCATGCA-TATAATAAATCAACTAAATATTACTAATAATTTAAATT
1 TTAATTCTTAATCTAATAATCATGCATTA-AATAAATCAACTAAATATTACTAATAATTTAAATT
*
62365 AAATTAAAACGTTAAAATGTTACCGTATTAGCAAAGTGTAGAGATAT
65 AAATTAAAACATTAAAATGTTACCGTATTAGCAAAGTGTAGAGATAT
62412 ATGATTTCTA
Statistics
Matches: 106, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
110 2 0.02
111 104 0.98
ACGTcount: A:0.45, C:0.10, G:0.08, T:0.36
Consensus pattern (111 bp):
TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTA
AATTAAAACATTAAAATGTTACCGTATTAGCAAAGTGTAGAGATAT
Found at i:65325 original size:34 final size:35
Alignment explanation
Indices: 65268--65338 Score: 92
Period size: 34 Copynumber: 2.1 Consensus size: 35
65258 GTTCGAAAAT
* *
65268 ATTTATATATTTTCTTTAAAAAATTAAATTCATAAA
1 ATTTATATATATTCTTTAAAAAATTAAAAT-ATAAA
*
65304 ATTTATATA-ATT-TTTACAAAATTAAAATATAAA
1 ATTTATATATATTCTTTAAAAAATTAAAATATAAA
65337 AT
1 AT
65339 GTTTAATGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
33 7 0.22
34 14 0.44
35 2 0.06
36 9 0.28
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (35 bp):
ATTTATATATATTCTTTAAAAAATTAAAATATAAA
Found at i:69188 original size:16 final size:16
Alignment explanation
Indices: 69164--69196 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
69154 AAATCAAAAT
69164 AATTAAATAAATATAA
1 AATTAAATAAATATAA
*
69180 AATTTAATAAATATAA
1 AATTAAATAAATATAA
69196 A
1 A
69197 TAATTTATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AATTAAATAAATATAA
Found at i:69198 original size:34 final size:35
Alignment explanation
Indices: 69160--69248 Score: 92
Period size: 34 Copynumber: 2.5 Consensus size: 35
69150 ACTTAAATCA
*
69160 AAATAATTAAATA-AATATAAAATTTAATAAATAT
1 AAATAATTAAATATAATATAAAATTAAATAAATAT
* * **
69194 AAATAATT-TATATGATATAAAATTAAATATCTAT
1 AAATAATTAAATATAATATAAAATTAAATAAATAT
*
69228 AATATAATTAAAAATTAATAT
1 AA-ATAATTAAATA-TAATAT
69249 TTAATTTATT
Statistics
Matches: 43, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
33 3 0.07
34 27 0.63
35 6 0.14
36 2 0.05
37 5 0.12
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.38
Consensus pattern (35 bp):
AAATAATTAAATATAATATAAAATTAAATAAATAT
Found at i:69262 original size:21 final size:23
Alignment explanation
Indices: 69211--69279 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 23
69201 TTATATGATA
69211 TAAAATTAAATATCTATAATATAAT
1 TAAAATT-AATAT-TATAATATAAT
*
69236 TAAAAATTAATATT-TAAT-TTAT
1 T-AAAATTAATATTATAATATAAT
*
69258 TAAAATTAATATTAAAAT-TAAT
1 TAAAATTAATATTATAATATAAT
69280 ATCTATAATA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
21 12 0.31
22 10 0.26
23 4 0.10
24 1 0.03
25 6 0.15
26 6 0.15
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.43
Consensus pattern (23 bp):
TAAAATTAATATTATAATATAAT
Found at i:69295 original size:14 final size:12
Alignment explanation
Indices: 69211--69364 Score: 83
Period size: 12 Copynumber: 12.8 Consensus size: 12
69201 TTATATGATA
69211 TAAAATTAAATAT
1 TAAAATT-AATAT
*
69224 CTATAATATAAT-T
1 -TAAAAT-TAATAT
*
69237 AAAAATTAATAT
1 TAAAATTAATAT
*
69249 T-TAATT--TAT
1 TAAAATTAATAT
69258 TAAAATTAATAT
1 TAAAATTAATAT
69270 TAAAATTAATAT
1 TAAAATTAATAT
*
69282 CTATAATATAATAT
1 -TAAAAT-TAATAT
69296 TACAAAATTAATAT
1 T--AAAATTAATAT
*
69310 T--AATTTAT-T
1 TAAAATTAATAT
*
69319 TAAAAAATTGATAT
1 T--AAAATTAATAT
*
69333 TAAAATTAA-AA
1 TAAAATTAATAT
*
69344 TCAAATATAATA-
1 TAAAAT-TAATAT
69356 TAAAATTAA
1 TAAAATTAA
69365 ATATAAAACC
Statistics
Matches: 110, Mismatches: 14, Indels: 35
0.69 0.09 0.22
Matches are distributed among these distances:
9 6 0.05
10 10 0.09
11 17 0.15
12 35 0.32
13 14 0.13
14 23 0.21
15 5 0.05
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.41
Consensus pattern (12 bp):
TAAAATTAATAT
Found at i:69333 original size:63 final size:60
Alignment explanation
Indices: 69206--69364 Score: 199
Period size: 58 Copynumber: 2.7 Consensus size: 60
69196 ATAATTTATA
69206 TGATA-TAAAATTAAATATCTATAATAT-A-ATTAAAAATTAATATTTAATTTATTAAAAT
1 TGATATTAAAATT-AATATCTATAATATAATATTAAAAATTAATATTTAATTTATTAAAAT
*
69264 TAATATTAAAATTAATATCTATAATATAATATTACAAAATTAATA-TTAATTTATTTAAAAAAT
1 TGATATTAAAATTAATATCTATAATATAATATTA-AAAATTAATATTTAATTTA-TT--AAAAT
*
69327 TGATATTAAAATTAAAATC-A-AATATAATA-T-AAAATTAA
1 TGATATTAAAATTAATATCTATAATATAATATTAAAAATTAA
69365 ATATAAAACC
Statistics
Matches: 91, Mismatches: 3, Indels: 14
0.84 0.03 0.13
Matches are distributed among these distances:
58 26 0.29
59 8 0.09
60 13 0.14
61 21 0.23
62 1 0.01
63 22 0.24
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (60 bp):
TGATATTAAAATTAATATCTATAATATAATATTAAAAATTAATATTTAATTTATTAAAAT
Done.