Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004536.1 Hibiscus syriacus cultivar Beakdansim tig00010018_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60337

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4119--4146
14
2.0
14
100
0
56
42
0
7
50
1.30
5870--5912
2
21.5
2
100
0
86
48
0
0
51
1.00
8817--8874
28
2.1
27
83
3
71
60
18
0
20
1.36
9881--9952
21
3.4
21
94
0
117
40
22
15
22
1.91
10797--10890
21
4.4
21
77
10
100
23
12
29
34
1.92
16040--16099
20
2.9
21
76
18
72
30
10
30
30
1.90
16985--17053
21
3.2
21
70
22
61
24
14
26
34
1.94
17863--17950
30
3.0
29
75
15
81
25
1
15
57
1.45
17876--17950
29
2.6
29
80
18
84
24
1
14
60
1.43
17868--17958
29
3.1
29
72
17
80
26
1
13
59
1.41
18460--18498
15
2.4
16
87
8
53
38
10
17
33
1.84
18460--18501
17
2.7
15
88
7
57
40
11
16
30
1.85
19174--19226
21
2.5
22
84
6
74
22
22
18
35
1.95
19212--19308
20
4.8
20
98
0
185
40
20
19
19
1.92
19235--19361
40
3.2
40
83
8
127
34
24
19
21
1.96
19215--19406
60
3.2
60
80
11
173
34
23
19
21
1.97
19295--19421
20
6.3
20
94
0
200
29
26
18
24
1.98
22733--22826
20
4.7
20
89
2
145
32
25
23
18
1.97
22818--22876
14
3.9
14
74
20
55
45
16
25
11
1.82
22809--22893
33
2.5
33
94
1
143
47
16
23
12
1.81
22908--22992
33
2.5
33
90
1
125
14
21
18
45
1.84
23109--23146
14
2.7
15
84
12
53
47
18
0
34
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24543--24634
21
4.4
20
70
16
62
25
17
34
22
1.96
24812--24846
12
2.9
12
95
0
61
45
8
11
34
1.71
25141--25229
20
4.4
20
89
0
106
33
22
21
22
1.97
25272--25320
20
2.5
20
82
0
62
20
18
24
36
1.94
25294--25387
33
2.8
34
81
3
118
13
18
22
45
1.84
27690--27755
22
3.0
22
88
0
96
22
15
37
24
1.92
27949--28021
20
3.7
20
98
0
137
19
20
21
38
1.94
28018--28058
21
2.0
21
90
0
64
43
17
21
17
1.87
28517--28605
42
2.0
45
91
6
148
35
0
13
50
1.42
34739--34807
32
2.2
32
84
5
86
27
5
30
36
1.80
36207--36239
16
2.1
16
94
0
57
60
24
9
6
1.49
36305--36363
10
5.7
10
73
15
57
57
20
11
10
1.63
36309--36357
16
3.1
16
93
0
89
57
22
12
8
1.61
37087--37161
24
3.1
24
84
3
89
56
20
10
13
1.66
37106--37162
14
4.4
14
72
17
50
54
22
12
10
1.68
42728--42790
7
9.0
7
100
0
126
42
0
57
0
0.99
42847--42882
6
6.0
6
100
0
72
16
50
0
33
1.46
57641--57679
13
3.2
13
85
7
55
28
0
0
71
0.86
59263--59296
13
2.5
14
90
9
61
23
11
5
58
1.55

Tables:   1

The End!