Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004538.1 Hibiscus syriacus cultivar Beakdansim tig00010029_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76258

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1603--1667
13
4.8
13
71
14
51
56
9
12
21
1.63
3774--3825
17
3.1
18
75
13
65
51
0
0
48
1.00
5455--5513
9
6.3
9
80
9
57
61
0
1
37
1.07
5462--5513
3
17.0
3
88
4
77
63
0
1
34
1.06
5472--5525
6
7.7
7
82
17
60
66
0
1
31
1.02
5797--5876
22
3.6
22
94
0
133
37
13
15
33
1.86
6240--6346
54
2.0
54
88
0
160
25
23
15
35
1.94
7416--7482
35
1.9
35
84
6
91
32
26
10
29
1.90
10420--10627
73
2.9
72
90
2
328
36
18
18
26
1.94
12291--12360
34
2.1
32
84
5
86
32
14
30
22
1.94
13559--13590
16
2.0
16
93
0
55
53
12
15
18
1.73
15897--15949
27
2.0
26
85
10
72
66
1
1
30
1.13
16600--16642
23
1.9
22
81
13
52
53
0
2
44
1.13
16450--16703
137
1.9
134
81
6
314
45
7
6
40
1.58
18312--18348
3
12.7
3
94
5
67
67
0
0
32
0.91
18344--18370
14
1.9
14
100
0
54
77
0
0
22
0.76
27331--27503
57
3.0
57
98
0
328
26
6
20
46
1.75
37176--37214
20
1.9
21
89
5
62
33
2
5
58
1.33
37462--37534
24
3.0
24
86
4
67
12
13
24
49
1.77
37479--37527
14
3.8
13
79
20
59
10
10
24
55
1.64
37473--37547
24
3.1
24
86
3
89
13
10
21
54
1.68
37914--37980
16
4.3
16
84
3
84
10
7
19
62
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37908--37972
32
2.0
32
93
0
112
7
7
23
61
1.49
42983--43067
23
3.7
23
72
12
84
30
24
25
18
1.98
43747--43800
19
2.8
20
91
2
83
14
33
31
20
1.93
46638--46665
13
2.2
13
100
0
56
25
14
14
46
1.82
50992--51028
19
2.0
19
89
5
58
27
0
0
72
0.84
51427--51504
19
4.0
19
66
18
52
41
1
2
55
1.22
52867--52926
29
2.2
25
82
11
66
51
1
0
46
1.10
53246--53295
23
2.1
24
85
3
66
42
0
6
52
1.26
59895--59959
3
21.3
3
76
9
60
56
0
1
41
1.08
59906--59955
13
4.0
13
89
5
77
56
0
0
44
0.99
61578--61607
2
15.5
2
93
6
53
50
0
0
50
1.00
74529--74767
54
4.5
54
81
10
253
30
23
14
31
1.94
74693--74835
48
3.0
47
78
15
134
27
25
13
33
1.93
74837--74906
35
2.0
36
88
8
108
21
20
21
37
1.95
75180--75221
19
2.2
20
95
4
77
35
9
14
40
1.78
76180--76254
6
11.5
6
74
13
51
9
16
0
74
1.06
76180--76253
13
5.5
13
79
7
60
9
14
0
75
1.03
76197--76258
7
9.5
6
87
6
61
12
16
0
70
1.16
76197--76258
13
4.7
13
81
15
74
12
16
0
70
1.16

Tables:   1

The End!