genome.fa.s4539.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004539.1 Hibiscus syriacus cultivar Beakdansim tig00010032_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86348

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3516--3707	38	5.1	38	88	0	276	21	17	25	35	1.95
4762--4849	44	2.0	45	88	6	135	42	1	13	43	1.51
10637--10698	27	2.3	27	100	0	124	14	16	30	38	1.88
10648--10695	16	3.3	16	67	27	52	16	14	31	37	1.89
10783--10809	11	2.5	11	100	0	54	29	25	11	33	1.91
11381--11610	2	117.5	2	66	22	98	47	2	4	44	1.37
11378--11523	67	2.2	66	79	9	154	50	1	4	43	1.32
11439--11520	33	2.4	34	86	8	123	48	2	4	43	1.37
11565--11643	28	2.9	27	76	17	74	45	5	3	45	1.43
11565--11643	26	2.8	27	75	18	72	45	5	3	45	1.43
11699--11765	22	2.9	24	75	8	75	46	7	2	43	1.47
11752--11801	18	2.8	18	93	0	82	46	8	4	42	1.52
11845--11961	35	3.4	34	80	9	112	41	7	5	44	1.57
11847--11968	33	3.5	34	76	14	117	42	7	5	44	1.56
13328--13375	24	2.0	24	95	0	87	29	6	8	56	1.53
13331--13384	24	2.2	24	86	0	72	27	9	9	53	1.63
13566--13609	23	1.9	23	90	0	70	43	15	13	27	1.85
17039--17095	20	2.8	20	81	5	60	28	17	21	33	1.96
18029--18095	30	2.2	30	84	5	82	41	7	14	35	1.75
23052--23139	19	4.7	19	83	5	90	43	10	17	29	1.81
23064--23137	37	2.0	37	86	0	103	45	9	14	29	1.77
23062--23153	19	4.9	19	81	2	105	43	8	18	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23257--23321	18	3.4	18	72	12	67	29	4	16	49	1.66
23259--23341	39	2.1	39	100	0	166	26	4	18	50	1.66
23755--23786	2	16.0	2	100	0	64	50	0	0	50	1.00
24810--24906	19	5.1	20	81	13	107	18	25	27	27	1.98
24800--24908	29	3.8	29	77	11	109	17	27	26	28	1.98
24905--24962	5	10.8	5	78	14	53	18	50	22	8	1.74
24904--24962	22	2.7	22	94	0	109	18	49	22	10	1.77
24931--24969	17	2.3	17	100	0	78	17	46	23	12	1.83
26778--26812	12	2.9	12	95	0	61	45	0	0	54	0.99
28932--29008	34	2.2	34	82	11	86	37	1	2	58	1.20
29320--29375	18	2.9	19	79	12	62	51	14	5	28	1.64
34167--34254	32	2.8	32	79	5	90	35	18	21	25	1.95
39350--39444	31	3.0	30	83	10	111	33	21	18	26	1.96
39350--39444	32	3.0	31	83	7	104	33	21	18	26	1.96
39503--39562	22	2.8	22	89	2	86	20	26	5	48	1.70
39763--39833	2	35.5	2	100	0	142	50	49	0	0	1.00
39833--39951	2	56.0	2	80	11	114	42	7	2	47	1.45
40428--40553	66	1.9	67	81	4	157	18	16	25	39	1.91
41936--41965	9	3.2	9	90	9	51	66	0	0	33	0.92
50421--50472	25	2.1	25	88	0	77	32	11	7	48	1.68
52344--52392	24	2.0	26	84	8	66	36	6	2	55	1.37
57014--57090	31	2.5	31	80	0	82	31	11	11	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63083--63117	18	1.9	18	88	0	52	22	0	5	71	1.07
68000--68106	55	1.9	57	86	5	155	27	16	23	32	1.96
71882--71906	2	12.5	2	100	0	50	52	0	0	48	1.00
72312--72620	20	15.4	20	89	2	451	20	19	27	32	1.97
76049--76117	9	7.4	9	76	20	54	69	1	0	28	0.97
76058--76088	3	10.7	3	93	6	55	70	0	0	29	0.87
76062--76102	12	3.4	13	87	12	61	70	0	0	29	0.87
76055--76117	30	2.1	30	83	16	78	69	0	0	30	0.88
76314--76361	3	15.7	3	95	4	87	33	0	0	66	0.92
76360--76387	3	9.3	3	100	0	56	32	0	32	35	1.58
76483--76617	24	5.6	24	90	0	207	34	22	20	22	1.97
80094--80148	23	2.8	18	73	23	56	61	0	0	38	0.96
80100--80172	23	3.0	24	78	13	78	57	0	1	41	1.07
80113--80150	17	2.2	18	86	13	53	60	0	0	39	0.97
86060--86119	21	2.7	22	82	7	68	25	36	21	16	1.94

Tables:   1

The End!