Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004541.1 Hibiscus syriacus cultivar Beakdansim tig00010051_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115183

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1709--1755
19
2.5
20
82
10
62
53
2
6
38
1.39
2270--2322
17
3.1
18
81
13
58
56
0
5
37
1.23
2951--3046
16
6.0
16
65
9
52
38
30
10
20
1.86
2880--3040
32
5.0
32
83
6
182
40
28
10
20
1.86
6465--6535
2
36.0
2
97
2
135
50
0
0
49
1.00
6599--6650
2
26.0
2
76
7
52
48
0
5
46
1.26
6798--6843
11
4.5
11
74
20
55
50
6
0
43
1.28
6800--6862
18
3.4
19
78
12
60
47
6
1
44
1.38
6927--7004
2
40.0
2
80
10
90
47
2
3
46
1.34
7045--7118
2
38.0
2
70
20
50
50
2
2
44
1.30
7046--7118
16
4.3
17
69
19
62
50
2
2
43
1.30
7076--7146
15
5.1
15
78
13
73
47
5
5
40
1.50
7076--7155
39
2.1
39
87
0
115
47
6
5
41
1.50
7130--7193
31
2.1
31
85
11
87
42
6
6
45
1.54
7150--7284
54
2.5
55
91
2
209
45
5
6
42
1.55
7190--7277
27
3.3
26
67
28
67
47
5
6
39
1.54
8118--8188
20
3.5
20
88
3
99
36
15
28
19
1.92
8570--9022
54
8.4
54
94
0
771
26
19
21
32
1.97
16697--16768
32
2.2
33
95
5
128
41
12
9
36
1.76
27516--27559
14
3.0
15
80
6
63
13
15
0
70
1.17
27741--27778
12
3.1
13
88
7
53
81
0
13
5
0.85
32156--32194
13
2.8
13
85
11
51
82
0
12
5
0.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36353--36391
9
4.1
10
83
12
55
12
20
0
66
1.24
40570--40608
4
9.5
4
97
2
69
74
0
23
2
0.94
44022--44388
91
4.0
91
95
0
653
42
11
9
37
1.73
48574--48613
21
2.0
20
90
5
62
57
2
0
40
1.12
48606--48649
19
2.3
20
81
14
58
43
2
6
47
1.42
48758--48802
2
22.5
2
100
0
90
51
0
0
48
1.00
63071--63123
11
5.3
10
82
13
56
81
0
7
11
0.88
63071--63123
10
5.4
10
84
10
56
81
0
7
11
0.88
64123--64508
111
3.5
110
90
3
596
30
15
25
27
1.96
64123--64546
55
7.7
55
89
4
592
30
15
25
28
1.96
70732--70782
26
2.0
26
84
7
68
50
9
0
39
1.35
73031--73696
54
12.5
53
91
1
1018
24
25
18
31
1.97
73023--73696
107
6.3
107
90
2
1031
24
25
17
31
1.97
75035--75061
11
2.5
11
100
0
54
7
0
7
85
0.75
75058--75142
8
10.1
8
86
11
100
11
9
0
78
0.95
75052--75139
9
10.3
9
85
12
116
11
7
0
80
0.90
75052--75139
17
5.2
17
83
9
117
11
7
0
80
0.90
75041--75142
25
4.0
25
81
13
111
11
7
0
79
0.98
79791--79841
26
2.0
26
84
7
68
50
9
0
39
1.35
81759--81800
2
21.0
2
100
0
84
50
0
0
50
1.00
82748--82788
21
2.0
21
90
9
66
31
4
4
58
1.40
84093--84136
18
2.5
19
89
10
67
29
0
4
65
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
84727--84761
17
2.1
17
94
0
61
11
14
48
25
1.77
90910--90939
14
2.1
14
93
0
51
46
3
6
43
1.46
91233--91283
19
2.7
20
85
8
63
45
0
1
52
1.12
91749--91804
29
1.9
29
85
7
78
32
14
16
37
1.88
91832--91935
31
3.3
30
79
15
104
59
1
2
35
1.23
91891--91968
27
2.9
27
84
5
88
57
1
0
41
1.07
92061--92088
2
14.0
2
100
0
56
50
0
0
50
1.00
92001--92128
68
1.9
68
95
3
231
38
3
4
53
1.40
92000--92142
68
2.1
68
87
6
209
39
4
5
50
1.45
95766--95848
19
4.3
19
73
6
69
28
15
28
26
1.96
100147--100187
19
2.2
19
90
0
64
29
17
31
21
1.96
102885--102930
18
2.6
18
82
3
58
56
2
4
36
1.31
107980--108012
4
8.2
4
100
0
66
24
0
0
75
0.80
113307--113380
37
1.9
38
86
5
105
47
22
12
17
1.81
114539--114577
18
2.2
17
86
4
51
17
2
2
76
1.01

Tables:   1

The End!