Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004542.1 Hibiscus syriacus cultivar Beakdansim tig00010052_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98836

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2037--2091
29
1.9
28
81
3
65
36
5
21
36
1.77
2372--2399
7
4.0
7
100
0
56
28
0
28
42
1.56
11645--11798
66
2.4
62
84
7
191
31
19
21
27
1.97
11809--11872
8
6.8
9
73
26
53
25
21
28
25
1.99
11809--11872
29
2.2
28
97
2
119
25
21
28
25
1.99
14471--14544
23
3.3
22
79
7
87
24
22
25
27
2.00
20704--20910
93
2.3
89
82
5
245
32
15
7
44
1.74
30653--30739
35
2.5
34
80
12
97
55
10
8
26
1.61
30949--30987
12
3.2
12
81
0
51
12
30
20
35
1.90
32835--33165
111
3.0
111
95
0
592
45
10
8
35
1.69
43546--43591
19
2.5
17
80
13
56
15
10
0
73
1.08
53862--53888
2
13.5
2
100
0
54
48
0
0
51
1.00
55764--55824
29
2.1
30
81
3
70
36
4
21
37
1.75
61095--61137
16
2.6
17
78
10
54
34
11
23
30
1.90
65345--65471
65
2.0
65
83
0
164
33
18
19
28
1.96
70403--70621
31
7.1
31
94
4
372
33
14
12
40
1.83
71138--71297
64
2.5
64
86
2
214
27
20
19
32
1.97
74543--74733
31
6.2
31
93
0
328
32
16
12
38
1.86
75248--75470
64
3.5
63
80
3
232
27
18
19
34
1.95
77399--77478
23
3.6
22
74
6
72
26
23
23
26
2.00
83281--83436
65
2.4
64
89
3
224
30
19
22
28
1.98
83731--83937
93
2.3
89
82
5
245
32
15
7
44
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93846--93878
15
2.2
15
89
10
50
6
33
24
36
1.80
95688--96013
110
3.0
111
91
4
549
44
10
7
36
1.69
96075--96104
15
2.0
15
100
0
60
66
0
6
26
1.16

Tables:   1

The End!