Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004543.1 Hibiscus syriacus cultivar Beakdansim tig00010075_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50407

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
886--946
20
3.1
20
92
4
97
11
21
19
47
1.81
1239--1307
22
3.1
22
89
0
111
20
18
44
15
1.86
1493--1539
19
2.4
20
82
7
60
17
17
31
34
1.92
1449--1534
19
4.4
19
73
13
68
23
16
30
30
1.96
14674--14896
81
2.7
81
88
2
322
26
20
13
39
1.89
15008--15289
54
5.2
54
88
0
411
30
19
20
29
1.97
15144--15284
27
5.2
27
61
19
69
33
17
19
29
1.95
25210--25246
2
18.5
2
100
0
74
51
0
0
48
1.00
25596--25638
3
14.3
3
100
0
86
67
0
0
32
0.91
27731--28075
137
2.5
138
83
4
439
26
20
15
37
1.93
27980--28324
119
2.9
123
88
4
531
26
20
15
37
1.92
28363--28556
36
5.3
36
72
8
160
36
13
19
30
1.90
28381--28565
37
5.1
37
74
2
203
36
11
18
32
1.87
28346--28565
73
3.0
73
89
1
343
35
12
18
32
1.89
35564--35647
43
1.9
44
85
2
116
32
23
11
32
1.91
36099--36171
36
2.0
36
91
0
119
30
10
17
41
1.84
37018--37048
8
3.9
8
91
0
53
83
0
0
16
0.64
37912--37939
2
14.0
2
100
0
56
50
0
0
50
1.00
40428--40461
17
2.0
17
88
0
50
26
8
17
47
1.77
41531--41598
6
9.9
7
81
15
72
79
0
20
0
0.73
41538--41598
14
4.5
13
82
11
61
78
0
21
0
0.75
41531--41598
33
2.0
35
91
5
113
79
0
20
0
0.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41531--41598
21
3.3
21
93
6
113
79
0
20
0
0.73
41531--41611
29
3.0
26
76
18
76
77
0
20
1
0.83

Tables:   1

The End!