genome.fa.s4544.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004544.1 Hibiscus syriacus cultivar Beakdansim tig00010079_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108976

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308--359	20	2.6	20	100	0	104	25	17	23	34	1.96
10662--10713	14	3.7	14	81	0	68	17	3	28	50	1.64
10662--10713	7	7.4	7	84	0	59	17	3	28	50	1.64
10646--10713	21	3.2	21	76	12	59	17	2	30	48	1.62
10646--10740	28	3.4	28	77	11	88	17	2	33	46	1.60
10641--10740	14	7.1	14	71	14	53	19	2	33	46	1.61
11240--11278	18	2.3	17	91	8	62	33	0	33	33	1.58
14686--14715	11	2.7	11	94	0	51	46	0	3	50	1.18
16835--16898	23	2.8	23	88	4	85	25	21	31	21	1.98
23793--23848	23	2.4	23	87	0	85	19	23	35	21	1.96
29094--29133	21	1.9	21	89	0	62	15	25	35	25	1.94
29561--29632	31	2.5	27	82	13	81	40	29	12	18	1.87
32593--32637	18	2.6	18	80	16	58	51	0	4	44	1.21
33542--33604	29	2.2	29	97	0	117	26	20	9	42	1.83
33937--34045	24	4.5	24	86	2	130	44	19	11	25	1.83
33954--34045	48	1.9	48	90	0	148	42	19	11	26	1.86
36412--36448	17	2.1	18	85	14	51	0	16	56	27	1.40
36954--36999	20	2.3	20	100	0	92	28	15	32	23	1.95
43925--44314	4	98.2	4	97	1	750	50	24	0	25	1.50
44662--44688	13	2.1	13	100	0	54	33	14	29	22	1.94
46707--46738	12	2.7	12	100	0	64	9	40	6	43	1.62
50942--50995	3	18.3	3	85	14	69	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50942--51004	15	4.6	14	81	16	71	28	0	0	71	0.86
52478--52521	8	5.0	9	83	10	56	22	4	0	72	1.02
52480--52560	14	6.0	13	72	17	67	22	4	1	71	1.12
52480--52536	16	3.7	15	80	13	55	21	3	1	73	1.07
56566--56749	34	5.5	34	81	5	155	34	27	18	20	1.96
56634--56715	32	2.6	32	94	0	146	31	29	19	19	1.96
62369--62393	12	2.1	12	100	0	50	32	36	16	16	1.90
66492--66851	124	2.9	126	87	3	498	31	24	17	26	1.97
66762--66878	34	3.5	34	71	9	105	35	24	14	24	1.93
66796--66904	32	3.3	32	70	9	103	33	27	12	25	1.93
66759--66917	66	2.4	66	93	0	273	34	24	15	25	1.95
67609--68268	328	2.0	328	99	0	1311	25	25	16	33	1.95
69249--69299	10	5.6	9	84	11	52	21	3	0	74	0.98
69266--69299	5	7.2	5	96	3	54	20	0	0	79	0.73
69266--69315	15	3.3	15	83	10	50	20	4	0	76	0.95
73406--73447	2	21.0	2	100	0	84	50	0	0	50	1.00
75221--75278	6	9.7	6	96	0	107	17	17	32	32	1.93
76014--76059	22	2.0	22	88	12	67	50	0	0	50	1.00
76014--76072	24	2.5	24	81	10	70	49	1	1	47	1.21
76703--76733	6	5.2	6	96	0	53	19	12	35	32	1.90
77088--77113	5	5.2	5	100	0	52	19	0	0	80	0.71
77297--77343	23	2.0	24	92	8	80	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77642--77680	2	19.5	2	100	0	78	48	0	0	51	1.00
84669--84693	2	12.5	2	100	0	50	52	48	0	0	1.00
97147--97263	60	2.0	59	81	1	135	27	21	23	28	1.99
99632--99665	15	2.1	17	89	10	54	67	5	0	26	1.13
99999--100042	21	2.1	21	86	0	61	27	15	18	38	1.91
100006--100047	21	2.0	21	90	0	66	23	16	21	38	1.93
101837--101934	23	4.3	23	85	5	119	26	16	24	32	1.96
103154--103195	21	2.0	21	90	0	66	16	28	30	23	1.96
103181--103242	21	3.0	21	74	9	63	20	19	33	25	1.96
106694--106733	21	1.9	21	94	0	71	32	10	7	50	1.64

Tables:   1

The End!