Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004545.1 Hibiscus syriacus cultivar Beakdansim tig00010086_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62055
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Found at i:2806 original size:15 final size:15
Alignment explanation
Indices: 2786--2818 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
2776 TATTTACCGA
2786 TTTCCATTACAAA-AT
1 TTTCCATTA-AAATAT
2801 TTTCCATTAAAATAT
1 TTTCCATTAAAATAT
2816 TTT
1 TTT
2819 TGGCCAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 3 0.18
15 14 0.82
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (15 bp):
TTTCCATTAAAATAT
Found at i:7627 original size:15 final size:15
Alignment explanation
Indices: 7607--7641 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
7597 TCTTGGGGCT
7607 GGAGGAGTATGAGGA
1 GGAGGAGTATGAGGA
7622 GGAGGAGTATGAGGA
1 GGAGGAGTATGAGGA
7637 GGAGG
1 GGAGG
7642 TGGAGGTGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.57, T:0.11
Consensus pattern (15 bp):
GGAGGAGTATGAGGA
Found at i:7652 original size:15 final size:15
Alignment explanation
Indices: 7634--7664 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7624 AGGAGTATGA
*
7634 GGAGGAGGTGGAGGT
1 GGAGGAGGGGGAGGT
7649 GGAGGAGGGGGAGGT
1 GGAGGAGGGGGAGGT
7664 G
1 G
7665 CTGCTACGGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.71, T:0.10
Consensus pattern (15 bp):
GGAGGAGGGGGAGGT
Found at i:9270 original size:26 final size:27
Alignment explanation
Indices: 9239--9299 Score: 72
Period size: 28 Copynumber: 2.3 Consensus size: 27
9229 CATAAATAAG
*
9239 AAATAAATCT-TACTT-TTAAAATAATT
1 AAATAAAT-TGTACTTGTCAAAATAATT
*
9265 AAATAAATTGTACTTGGTCATAATAATT
1 AAATAAATTGTACTT-GTCAAAATAATT
9293 AAATAAA
1 AAATAAA
9300 AATTGCACTC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 1 0.03
26 13 0.43
28 16 0.53
ACGTcount: A:0.51, C:0.07, G:0.05, T:0.38
Consensus pattern (27 bp):
AAATAAATTGTACTTGTCAAAATAATT
Found at i:13599 original size:18 final size:18
Alignment explanation
Indices: 13565--13598 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
13555 TATGCCTCTA
*
13565 CATCTCAAGATCATTTTG
1 CATCTCAAGACCATTTTG
13583 CATCTCAAG-CCATTTT
1 CATCTCAAGACCATTTT
13599 TATTTTTGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.26, C:0.26, G:0.09, T:0.38
Consensus pattern (18 bp):
CATCTCAAGACCATTTTG
Found at i:13982 original size:27 final size:27
Alignment explanation
Indices: 13925--13982 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
13915 GTAAGAACTC
* ** *
13925 TTTTAATATTATTTTTATTTATTTATT
1 TTTTAATATTATTTTTATATAAATATA
13952 TTTTAATATTATTTTT-TAATAAATATA
1 TTTTAATATTATTTTTAT-ATAAATATA
13979 TTTT
1 TTTT
13983 TTTAAAAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (27 bp):
TTTTAATATTATTTTTATATAAATATA
Found at i:13984 original size:16 final size:13
Alignment explanation
Indices: 13925--13972 Score: 62
Period size: 13 Copynumber: 3.6 Consensus size: 13
13915 GTAAGAACTC
13925 TTTTAATATTA-T
1 TTTTAATATTATT
*
13937 TTTTATTTATTTATT
1 TTTTA-ATA-TTATT
13952 TTTTAATATTATT
1 TTTTAATATTATT
13965 TTTTAATA
1 TTTTAATA
13973 AATATATTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
12 5 0.16
13 15 0.48
14 5 0.16
15 6 0.19
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
TTTTAATATTATT
Found at i:13988 original size:14 final size:15
Alignment explanation
Indices: 13925--13994 Score: 53
Period size: 14 Copynumber: 4.9 Consensus size: 15
13915 GTAAGAACTC
13925 TTTT-AATATTATTT
1 TTTTAAATATTATTT
*
13939 TTATT-TAT-TTA-TT
1 TT-TTAAATATTATTT
13952 TTTT-AATATTATTT
1 TTTTAAATATTATTT
13966 TTTAATAAATA-TATTT
1 TTT--TAAATATTATTT
*
13982 TTTTAAAAATTAT
1 TTTTAAATATTAT
13995 AGTCGAAGAA
Statistics
Matches: 46, Mismatches: 3, Indels: 13
0.74 0.05 0.21
Matches are distributed among these distances:
12 4 0.09
13 7 0.15
14 15 0.33
15 7 0.15
16 9 0.20
17 4 0.09
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
TTTTAAATATTATTT
Found at i:16389 original size:3 final size:3
Alignment explanation
Indices: 16374--16416 Score: 61
Period size: 3 Copynumber: 14.3 Consensus size: 3
16364 TCTATCAAAA
*
16374 TAT TAT TAG TAT TAT TAT TAT TAAT TA- TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT T
16417 CCATTTTACA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 31 0.86
4 3 0.08
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:16404 original size:18 final size:19
Alignment explanation
Indices: 16374--16414 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 19
16364 TCTATCAAAA
16374 TATT-ATTAGTATTATTAT
1 TATTAATTAGTATTATTAT
16392 TATTAATTA-TATTATTAT
1 TATTAATTAGTATTATTAT
16410 TATTA
1 TATTA
16415 TTCCATTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 18 0.82
19 4 0.18
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (19 bp):
TATTAATTAGTATTATTAT
Found at i:18398 original size:5 final size:5
Alignment explanation
Indices: 18385--18421 Score: 56
Period size: 5 Copynumber: 7.2 Consensus size: 5
18375 CTCTTCTCAC
*
18385 TTTTA TTTTG TTTTA TTTTA TTTTA TTTTA TCTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA T-TTTA T
18422 GAAAATTGCA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.16, C:0.03, G:0.03, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:19677 original size:7 final size:7
Alignment explanation
Indices: 19665--19717 Score: 106
Period size: 7 Copynumber: 7.6 Consensus size: 7
19655 ACAATTTATA
19665 ATGAAGC
1 ATGAAGC
19672 ATGAAGC
1 ATGAAGC
19679 ATGAAGC
1 ATGAAGC
19686 ATGAAGC
1 ATGAAGC
19693 ATGAAGC
1 ATGAAGC
19700 ATGAAGC
1 ATGAAGC
19707 ATGAAGC
1 ATGAAGC
19714 ATGA
1 ATGA
19718 CACCTTAGTG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 46 1.00
ACGTcount: A:0.43, C:0.13, G:0.28, T:0.15
Consensus pattern (7 bp):
ATGAAGC
Found at i:21419 original size:18 final size:18
Alignment explanation
Indices: 21396--21436 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
21386 CAAGTTATAA
21396 CATCAGAAGTGATACGAG
1 CATCAGAAGTGATACGAG
21414 CATCAGAAGTGATACGAG
1 CATCAGAAGTGATACGAG
21432 CATCA
1 CATCA
21437 TAATTTATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.17
Consensus pattern (18 bp):
CATCAGAAGTGATACGAG
Found at i:23812 original size:40 final size:42
Alignment explanation
Indices: 23767--23845 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
23757 GTAACGCGAA
* *
23767 GAAGTTCGTGTTGTAA-TT-TTCTAAATTCGTTGCGATAGTC
1 GAAGTTCGCGTTGCAATTTATTCTAAATTCGTTGCGATAGTC
* *
23807 GAAGTTTGCGTTGCAATTTATTTTAAATTCGTTGCGATA
1 GAAGTTCGCGTTGCAATTTATTCTAAATTCGTTGCGATA
23846 TTCCAAAATC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 13 0.39
41 2 0.06
42 18 0.55
ACGTcount: A:0.24, C:0.11, G:0.22, T:0.43
Consensus pattern (42 bp):
GAAGTTCGCGTTGCAATTTATTCTAAATTCGTTGCGATAGTC
Found at i:23949 original size:6 final size:6
Alignment explanation
Indices: 23938--23980 Score: 86
Period size: 6 Copynumber: 7.2 Consensus size: 6
23928 GAAGACACGT
23938 ATTACC ATTACC ATTACC ATTACC ATTACC ATTACC ATTACC A
1 ATTACC ATTACC ATTACC ATTACC ATTACC ATTACC ATTACC A
23981 CGACCACGAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.35, C:0.33, G:0.00, T:0.33
Consensus pattern (6 bp):
ATTACC
Found at i:23986 original size:6 final size:6
Alignment explanation
Indices: 23977--24138 Score: 213
Period size: 6 Copynumber: 27.5 Consensus size: 6
23967 CATTACCATT
23977 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
* * * *
24025 ACCACG ACCACG ACCCCG ACCCCG ACCACG ACCCCG ACC-CG ACCCCG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
* * * * *
24072 ACCCCG ACCCCG ACCCCG ACCACG ACCCCG ACCCCG ACC-CG ACCACG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
*
24119 ACCACG ACCCCG ACC-CG ACC
1 ACCACG ACCACG ACCACG ACC
24139 CGAGACGAGA
Statistics
Matches: 148, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
5 15 0.10
6 133 0.90
ACGTcount: A:0.26, C:0.57, G:0.17, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:23986 original size:18 final size:18
Alignment explanation
Indices: 23947--23986 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
23937 TATTACCATT
**
23947 ACCATTACCATTACCATT
1 ACCATTACCATTACCACG
23965 ACCATTACCATTACCACG
1 ACCATTACCATTACCACG
23983 ACCA
1 ACCA
23987 CGACCACGAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.35, C:0.38, G:0.03, T:0.25
Consensus pattern (18 bp):
ACCATTACCATTACCACG
Found at i:34317 original size:32 final size:32
Alignment explanation
Indices: 34252--34318 Score: 98
Period size: 32 Copynumber: 2.1 Consensus size: 32
34242 ATTTTACTAG
* * *
34252 TCCTCTTCTAGTCTCCCACGATCAAGCCTTTT
1 TCCTCTTCTAGTCTCCCAAGATCAAACCGTTT
*
34284 TCCTCTTCTAGTCTCCCAAGCTCAAACCGTTT
1 TCCTCTTCTAGTCTCCCAAGATCAAACCGTTT
34316 TCC
1 TCC
34319 GCTCAAGCCT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.16, C:0.39, G:0.09, T:0.36
Consensus pattern (32 bp):
TCCTCTTCTAGTCTCCCAAGATCAAACCGTTT
Found at i:36408 original size:20 final size:20
Alignment explanation
Indices: 36383--36420 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
36373 TGAACGAATG
36383 TGTTCTTCCAATAGGTAATT
1 TGTTCTTCCAATAGGTAATT
*
36403 TGTTCTTCTAATAGGTAA
1 TGTTCTTCCAATAGGTAA
36421 CATTTCACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.13, G:0.16, T:0.45
Consensus pattern (20 bp):
TGTTCTTCCAATAGGTAATT
Found at i:39225 original size:19 final size:20
Alignment explanation
Indices: 39177--39236 Score: 86
Period size: 19 Copynumber: 3.0 Consensus size: 20
39167 CAGAATGCTC
39177 GAATGGTATCGATACTCCTAT
1 GAATGGTATCGATAC-CCTAT
39198 GCAATGGTATCGATACCCTAT
1 G-AATGGTATCGATACCCTAT
*
39219 G-ATGGTACCGATACCCTA
1 GAATGGTATCGATACCCTA
39237 AGGTATATAA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
19 16 0.43
21 7 0.19
22 14 0.38
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (20 bp):
GAATGGTATCGATACCCTAT
Found at i:45000 original size:23 final size:23
Alignment explanation
Indices: 44972--45032 Score: 74
Period size: 21 Copynumber: 2.7 Consensus size: 23
44962 TTTGTGCATA
44972 AGGTATCGATACCCCCTTTG-AAT
1 AGGTATCGATACCCCC-TTGCAAT
* *
44995 ATGTATTGATA-CCCC-TGCAAT
1 AGGTATCGATACCCCCTTGCAAT
45016 AGGTATCGATACCCCCT
1 AGGTATCGATACCCCCT
45033 GATGGTACCG
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
20 2 0.06
21 12 0.39
22 8 0.26
23 9 0.29
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (23 bp):
AGGTATCGATACCCCCTTGCAAT
Found at i:47768 original size:22 final size:22
Alignment explanation
Indices: 47740--47798 Score: 86
Period size: 22 Copynumber: 2.8 Consensus size: 22
47730 CGATACTCCC
47740 CAATGGTATCGATACCCCTATG
1 CAATGGTATCGATACCCCTATG
*
47762 CAATGGTATCAATACCCCTATG
1 CAATGGTATCGATACCCCTATG
*
47784 --ATGGTACCGATACCC
1 CAATGGTATCGATACCC
47799 TAAGGAATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
20 13 0.38
22 21 0.62
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (22 bp):
CAATGGTATCGATACCCCTATG
Found at i:51973 original size:14 final size:15
Alignment explanation
Indices: 51954--51986 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
51944 AACCCTCCAA
51954 AAAC-TTAGAAAAAT
1 AAACTTTAGAAAAAT
*
51968 AAACTTTGGAAAAAT
1 AAACTTTAGAAAAAT
51983 AAAC
1 AAAC
51987 ATACTTAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.61, C:0.09, G:0.09, T:0.21
Consensus pattern (15 bp):
AAACTTTAGAAAAAT
Found at i:54377 original size:21 final size:21
Alignment explanation
Indices: 54348--54392 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
54338 TGATTTATTA
* *
54348 TTATGGATTTCAAGTTTTTTG
1 TTATAGATTTCAAGTTTGTTG
54369 TTATAGATTTCAAGTTTGTTG
1 TTATAGATTTCAAGTTTGTTG
54390 TTA
1 TTA
54393 CGGATGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.22, C:0.04, G:0.18, T:0.56
Consensus pattern (21 bp):
TTATAGATTTCAAGTTTGTTG
Found at i:54402 original size:21 final size:21
Alignment explanation
Indices: 54352--54402 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
54342 TTATTATTAT
* *
54352 GGATTTCAAGTTTTTTGTTAT
1 GGATTTCAAGTTTGTTGTTAC
*
54373 AGATTTCAAGTTTGTTGTTAC
1 GGATTTCAAGTTTGTTGTTAC
*
54394 GGATGTCAA
1 GGATTTCAA
54403 ATTTATTGGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.24, C:0.08, G:0.22, T:0.47
Consensus pattern (21 bp):
GGATTTCAAGTTTGTTGTTAC
Found at i:54664 original size:43 final size:44
Alignment explanation
Indices: 54578--54666 Score: 144
Period size: 45 Copynumber: 2.0 Consensus size: 44
54568 ACACCACTAT
*
54578 ATGTTATAACATTTAGCGGCTTTTTTTTGGAACAAACGACACAAA
1 ATGTTAGAACATTTAGCGGCTTTTTTTT-GAACAAACGACACAAA
*
54623 ATGTTAGAACATTTAGCGGCTTTTTTTT-AACAAACGCCACAAA
1 ATGTTAGAACATTTAGCGGCTTTTTTTTGAACAAACGACACAAA
54666 A
1 A
54667 GAAAAGATAA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
43 15 0.36
45 27 0.64
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.33
Consensus pattern (44 bp):
ATGTTAGAACATTTAGCGGCTTTTTTTTGAACAAACGACACAAA
Found at i:57774 original size:27 final size:28
Alignment explanation
Indices: 57744--57796 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
57734 TTTATCTGCT
*
57744 CAAA-ATTAAGGTGT-TTTTTCTATCTAC
1 CAAAGATT-AGGTGTCTTTTTCCATCTAC
*
57771 CAAAGATTAGGTTTCTTTTTCCATCT
1 CAAAGATTAGGTGTCTTTTTCCATCT
57797 GGCAAGTCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
27 9 0.41
28 13 0.59
ACGTcount: A:0.26, C:0.17, G:0.11, T:0.45
Consensus pattern (28 bp):
CAAAGATTAGGTGTCTTTTTCCATCTAC
Found at i:58537 original size:22 final size:22
Alignment explanation
Indices: 58512--58578 Score: 116
Period size: 22 Copynumber: 3.0 Consensus size: 22
58502 GGCATGTGAA
58512 ATATGTCCCGAAGGACCTATGT
1 ATATGTCCCGAAGGACCTATGT
58534 ATATGTCCCGAAGGACCTATGT
1 ATATGTCCCGAAGGACCTATGT
* *
58556 ATATGTCCCAAAGGACCCATGT
1 ATATGTCCCGAAGGACCTATGT
58578 A
1 A
58579 ACCCTCGACT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 43 1.00
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.25
Consensus pattern (22 bp):
ATATGTCCCGAAGGACCTATGT
Found at i:60513 original size:766 final size:770
Alignment explanation
Indices: 58556--60601 Score: 3495
Period size: 766 Copynumber: 2.7 Consensus size: 770
58546 GGACCTATGT
* * * * *
58556 ATATGTCCCAAAGGACCCATGTAACCCTCGACTCTTAGCATGCCAACTATACCTATGGCTCTCAT
1 ATATGTCCCGAAGGACCTATGGAACCCTCGACTCTTGGCATGCCAACTATACCTATAGCTCTCAT
* *
58621 ATCACATAACATGGGCATTATTGTTATACTTCCTATATTCATGTACTCATGTCATACCTCTTATA
66 ATCACATAACATGGGCATTATTGTTACACTTCCTATATTCATGTACTCATGTCATATCTCTTATA
*
58686 ATCACATATGTCTTTTCTTCTATCACATATCACACGTACATATAATCATCAATATCATATCATAT
131 ATCACATATGTCTTTTCTTCTATCACATATCACA-GTACATATAATCATCAATCTCATATCATAT
58751 AACATATGTTATTTGAATATGTTCACATGAATCATATATCATTTATCTAATCATATACCCATATA
195 AACATATGTTATTTGAATATGTTCACATGAATCATATATCATTTATCTAATCATATACCC-----
58816 TATATATATATAACTTATGCATGTGTTTATAATGATCATCATGTATGCATGTTCATAACTATTGG
255 -ATATATATATAACTTATGCATGTGTTTATAATGATCATCATGTATGCATGTTCATAACTATTGG
*
58881 AATATGAATACTAACATAGGAAATAGACTTATCACAAGTCTTATTTCCATTGAATTATACCTATA
319 ACTATGAATACTAACATAGGAAATAGACTTATCACAAGTCTTATTTCCATTGAATTATACCTATA
*
58946 GTATGCACTCACCTTGGTCTCACTTGATCCCAATAACTTCTATAACTTGATTTTTCTTTCTTCAT
384 GTATGCACTCACCTTGGTCTCACTTGATCCCAATAACTTATATAACTTGATTTTTCTTTCTTCAT
* * * *
59011 CGATTCTTACTTCTCGGTCATTCCGGAACTTGTTTGTGCTCGATATCTATACAATCATAAACATA
449 CGATTCTAACTTCTTGGTCATTCCAGAACTTGTTTGTGCTCGATATCTACACAATCATAAACATA
*
59076 TAATAATGCATTTCTTATAAATCTGAACATGTAATCCAATTATGCAAATATAATCATACTCATCA
514 TAATAATGCATTTCTTATAAATATGAACATGTAATCCAATTATGCAAATATAATCATACTCATCA
59141 TATTATAATTAAGTCATGTCACATATGTTTCACTATAACAATAACAATATGATAGATACTCATGT
579 TATTATAATTAAGTCATGTCACATATGTTTCACTATAACAATAACAATATGATAGATACTCATGT
* *
59206 AAATATTTTTTATATCTTTTATAGGCTCATGTATATTACTGAGAACATAAGGTATGCAAGTACAT
644 AAATATTTTTTATATCTTTTATAGGCCCATGTATATTACTGAGAACATAAGGTATGCAAGTAAAT
*
59271 TGAGGTTGTGCACATATGCTATCACCATATCTCGTATAAAGATCCATTGAGTTTCATGTGAA
709 TGAGGTTGTGCACATATGCTATCACCATATCTCGTATAAAGATCCACTGAGTTTCATGTGAA
* *
59333 ATATGTCCCGAAGGACCTATGGAACCCTCGACTCTTGGCATGTCAACTATACCTATAGCTCTCAC
1 ATATGTCCCGAAGGACCTATGGAACCCTCGACTCTTGGCATGCCAACTATACCTATAGCTCTCAT
59398 ATCACATAACATGGGCATTATTGTTACA-TTGCCTATATTCATGTACTCATGTCATATCTCTTAT
66 ATCACATAACATGGGCATTATTGTTACACTT-CCTATATTCATGTACTCATGTCATATCTCTTAT
* * *
59462 AATCAC--AT-TCTTTTCTTCTATCATATATCAC-CTACATATAATCATCAATCTCATATTATAT
130 AATCACATATGTCTTTTCTTCTATCACATATCACAGTACATATAATCATCAATCTCATATCATAT
*
59523 AACATATGTTATTTGAATATGTTCACATGAATTATATATCATTTATCTAATCATATACCCATATA
195 AACATATGTTATTTGAATATGTTCACATGAATCATATATCATTTATCTAATCATATACCCATATA
59588 TATATAACTTATGCATGTGTTTATAATGATCATCATGTATGCATGTTCATAACTATTGGACTATG
260 TATATAACTTATGCATGTGTTTATAATGATCATCATGTATGCATGTTCATAACTATTGGACTATG
59653 AATACTAACATAGGAAATAGACTTATCACAAGTCTTATTTCCATTGAATTATACCTATAGTATGC
325 AATACTAACATAGGAAATAGACTTATCACAAGTCTTATTTCCATTGAATTATACCTATAGTATGC
* * *
59718 ACTCACCTTGGTCTCACTTGATACCAATAACTTTTATAACTTGATTTTTCTTTCTTCATTGATTC
390 ACTCACCTTGGTCTCACTTGATCCCAATAACTTATATAACTTGATTTTTCTTTCTTCATCGATTC
59783 TAACTTCTTGGTCATTCCAGAACTTGTTTGTGCTCGATATCTACACAATCATAAACATATAATAA
455 TAACTTCTTGGTCATTCCAGAACTTGTTTGTGCTCGATATCTACACAATCATAAACATATAATAA
59848 TGCATTTCTTATAAATATGAACATGTAATCCAATTATGCAAATATAATCATACTCATCATATTAT
520 TGCATTTCTTATAAATATGAACATGTAATCCAATTATGCAAATATAATCATACTCATCATATTAT
* *
59913 AATTAAGTCATGTCACATATGTTTCAGTATAACAATAATAATATGATAGATACTCATGTAAATA-
585 AATTAAGTCATGTCACATATGTTTCACTATAACAATAACAATATGATAGATACTCATGTAAATAT
*
59977 TTTTTATATC-TTTATAGGCCCATGTATATTACTGAGAACATAAGGTATGCGAGTAAATTGAGGT
650 TTTTTATATCTTTTATAGGCCCATGTATATTACTGAGAACATAAGGTATGCAAGTAAATTGAGGT
* *
60041 TGTGCACATATGTTGTCACCATATCTCGTATAAAGATCCACTGAGTTTCATGTGAA
715 TGTGCACATATGCTATCACCATATCTCGTATAAAGATCCACTGAGTTTCATGTGAA
*
60097 ATATGTCCCGAAGGACCTATGGAACCCTCGACTCTTGGCATGCCAACTATACCTATAGCTATCAT
1 ATATGTCCCGAAGGACCTATGGAACCCTCGACTCTTGGCATGCCAACTATACCTATAGCTCTCAT
60162 ATCACATAACATGGGCATTATTGTTACACTTCCTATATTCATGTACTCATGTCATATCTCTTATA
66 ATCACATAACATGGGCATTATTGTTACACTTCCTATATTCATGTACTCATGTCATATCTCTTATA
60227 ATCACATATGTCTTTTCTTCTATCACATATCACATGTACATATAATCATCAATCTCATATCATAT
131 ATCACATATGTCTTTTCTTCTATCACATATCACA-GTACATATAATCATCAATCTCATATCATAT
* * * *
60292 AAAATATGTTATATGAATATGTTAACATGAATCATATATCATTTATCCAATCATATACCCATATA
195 AACATATGTTATTTGAATATGTTCACATGAATCATATATCATTTATCTAATCATATACCCATATA
* * *
60357 TATATAA-TTATGCATCTGTTTATAATGATCATCATGTATACATGTTTATAACTATTGGACTATG
260 TATATAACTTATGCATGTGTTTATAATGATCATCATGTATGCATGTTCATAACTATTGGACTATG
*
60421 -ATACTAACATAGGAAATAGACTTATCACAAGTCTTATTTCCATTGAATTATACCTATAATATGC
325 AATACTAACATAGGAAATAGACTTATCACAAGTCTTATTTCCATTGAATTATACCTATAGTATGC
* * *
60485 ACTCACCTTGGCCTCA-TTGATCCCAATAACTTATATAACTTGATTTTTATTTCTTGATCGATTC
390 ACTCACCTTGGTCTCACTTGATCCCAATAACTTATATAACTTGATTTTTCTTTCTTCATCGATTC
* *
60549 TAACTT-TTCTGTCGTTCCAGAACTT-TCTTGTGCTCGATATCTACACAATCATA
455 TAACTTCTT-GGTCATTCCAGAACTTGT-TTGTGCTCGATATCTACACAATCATA
60602 CATTCCAAGT
Statistics
Matches: 1206, Mismatches: 54, Indels: 29
0.94 0.04 0.02
Matches are distributed among these distances:
764 233 0.19
765 15 0.01
766 474 0.39
767 100 0.08
768 54 0.04
769 95 0.08
772 86 0.07
774 22 0.02
775 2 0.00
776 2 0.00
777 123 0.10
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.38
Consensus pattern (770 bp):
ATATGTCCCGAAGGACCTATGGAACCCTCGACTCTTGGCATGCCAACTATACCTATAGCTCTCAT
ATCACATAACATGGGCATTATTGTTACACTTCCTATATTCATGTACTCATGTCATATCTCTTATA
ATCACATATGTCTTTTCTTCTATCACATATCACAGTACATATAATCATCAATCTCATATCATATA
ACATATGTTATTTGAATATGTTCACATGAATCATATATCATTTATCTAATCATATACCCATATAT
ATATAACTTATGCATGTGTTTATAATGATCATCATGTATGCATGTTCATAACTATTGGACTATGA
ATACTAACATAGGAAATAGACTTATCACAAGTCTTATTTCCATTGAATTATACCTATAGTATGCA
CTCACCTTGGTCTCACTTGATCCCAATAACTTATATAACTTGATTTTTCTTTCTTCATCGATTCT
AACTTCTTGGTCATTCCAGAACTTGTTTGTGCTCGATATCTACACAATCATAAACATATAATAAT
GCATTTCTTATAAATATGAACATGTAATCCAATTATGCAAATATAATCATACTCATCATATTATA
ATTAAGTCATGTCACATATGTTTCACTATAACAATAACAATATGATAGATACTCATGTAAATATT
TTTTATATCTTTTATAGGCCCATGTATATTACTGAGAACATAAGGTATGCAAGTAAATTGAGGTT
GTGCACATATGCTATCACCATATCTCGTATAAAGATCCACTGAGTTTCATGTGAA
Done.