genome.fa.s4547.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004547.1 Hibiscus syriacus cultivar Beakdansim tig00010091_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  170957

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
236--290	24	2.5	21	76	21	58	50	0	9	40	1.34
304--341	16	2.3	17	90	4	60	65	0	0	34	0.93
581--681	3	31.7	3	70	13	60	36	2	3	56	1.33
1763--1798	11	3.4	11	96	3	65	19	16	8	55	1.66
3037--3084	22	2.1	24	84	7	64	18	10	0	70	1.15
6328--6368	14	2.9	14	85	0	55	24	21	29	24	1.99
11548--11627	30	2.7	30	80	7	99	48	10	13	27	1.74
13374--13412	20	2.0	20	100	0	78	35	30	10	23	1.88
17766--17847	22	3.7	22	81	0	101	19	36	15	28	1.93
17999--18073	28	2.7	28	81	2	89	38	6	8	46	1.60
18063--18107	22	2.0	22	83	8	56	42	4	4	48	1.43
18085--18149	29	2.3	28	82	12	80	43	7	3	46	1.48
21175--21242	29	2.3	30	84	2	84	32	8	25	33	1.86
23402--23498	12	8.4	11	74	15	61	77	4	14	4	1.07
23404--23470	35	1.9	34	85	8	91	79	4	11	4	1.03
23415--23472	13	4.5	13	76	8	55	79	5	12	3	1.02
29797--29829	4	8.2	4	100	0	66	24	0	0	75	0.80
40248--40745	81	6.1	81	91	0	771	30	22	11	34	1.90
40254--40744	163	3.0	163	91	0	761	30	23	12	34	1.91
41162--41362	95	2.1	95	82	5	253	25	23	12	38	1.90
41349--41398	18	2.8	18	93	0	82	34	22	10	34	1.87
42814--42877	3	20.7	3	76	17	51	42	0	1	56	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42814--42877	10	6.2	10	76	16	60	42	0	1	56	1.09
44114--44150	10	3.9	10	89	10	60	35	0	0	64	0.94
51746--52177	199	2.2	199	90	1	661	33	14	18	33	1.91
51746--52177	100	4.3	100	90	1	654	33	14	18	33	1.91
52144--52209	20	3.3	20	89	0	96	24	24	18	33	1.97
52362--52448	3	28.7	3	74	15	72	37	3	1	57	1.23
52361--52457	7	13.4	7	71	19	51	39	4	1	55	1.26
55826--55851	2	13.0	2	100	0	52	50	0	0	50	1.00
62534--62700	90	1.9	90	92	2	282	37	11	5	44	1.66
66554--67129	81	7.1	81	88	1	816	32	21	11	35	1.89
66554--67129	161	3.6	163	88	3	826	32	21	11	35	1.89
66554--67129	242	2.4	242	89	1	861	32	21	11	35	1.89
67400--67600	95	2.1	95	82	5	253	26	22	13	37	1.91
73124--73334	95	2.2	95	87	1	289	35	15	22	27	1.94
73685--74244	59	9.7	58	90	2	851	31	12	19	36	1.88
73682--74244	117	4.8	117	91	1	877	31	12	19	36	1.89
80409--80631	94	2.4	94	83	2	259	35	14	23	26	1.94
80890--81393	58	8.7	58	91	3	798	32	12	19	35	1.88
80887--81397	117	4.4	117	92	2	832	32	12	19	35	1.88
83529--83640	58	1.9	58	83	3	145	41	14	22	22	1.89
83600--83705	29	3.7	29	86	3	133	37	17	21	22	1.94
89533--89557	13	1.9	13	100	0	50	32	16	28	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89520--89557	20	1.9	20	88	0	58	36	15	23	23	1.94
89521--89564	20	2.2	20	83	0	52	38	18	20	22	1.93
90531--90589	22	2.7	22	81	0	73	30	18	13	37	1.90
95982--96047	30	2.2	31	81	8	82	39	4	18	37	1.71
96652--97207	59	9.5	59	74	5	371	37	11	22	29	1.89
96661--97142	118	4.1	118	92	0	743	37	10	22	29	1.88
97336--97430	44	2.2	45	88	3	140	37	6	25	30	1.81
102760--103758	498	2.0	497	98	0	1946	37	17	15	30	1.90
107023--107106	23	3.7	23	86	0	123	32	26	25	16	1.96
107899--107956	21	2.8	21	91	0	98	25	24	22	27	2.00
108718--108758	22	1.9	21	85	14	57	48	0	0	51	1.00
109028--109060	17	1.9	17	88	11	50	27	6	9	57	1.53
109612--109751	30	4.7	30	75	8	115	62	10	2	24	1.40
116772--116812	2	20.5	2	100	0	82	48	0	0	51	1.00
118599--118631	16	2.1	16	100	0	66	36	0	18	45	1.49
126936--126970	18	1.9	18	88	0	52	25	11	2	60	1.45
130474--130510	14	2.6	15	87	12	60	54	0	0	45	1.00
130688--130803	35	3.4	34	83	4	144	23	23	17	36	1.95
130688--130819	69	1.9	69	86	6	187	24	20	18	37	1.94
130839--130939	34	2.9	36	82	5	134	17	17	21	42	1.89
130722--130977	118	2.2	116	86	3	343	23	17	17	41	1.90
131028--131084	30	1.9	30	85	0	78	35	22	19	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131056--131119	20	3.2	20	95	0	119	34	18	21	25	1.96
131308--131355	19	2.7	19	76	20	50	29	10	16	43	1.81
138142--138169	10	2.8	10	100	0	56	60	0	0	39	0.97
138476--138534	26	2.3	26	96	0	109	15	37	30	16	1.90
138800--138923	56	2.2	56	91	2	196	7	25	8	58	1.52
139353--139390	14	2.8	14	81	18	53	55	0	0	44	0.99
140517--140568	20	2.6	20	100	0	104	38	0	9	51	1.35
141208--141261	21	2.5	22	87	3	74	48	1	1	48	1.23
141883--141939	23	2.5	23	88	0	78	42	5	14	38	1.68
143776--143896	59	2.1	58	84	9	156	44	3	2	49	1.32
143776--143920	59	2.4	62	81	10	151	44	3	2	48	1.33
147244--147296	2	26.5	2	100	0	106	50	49	0	0	1.00
149024--149101	22	3.5	22	77	17	81	56	1	2	39	1.21
149138--149178	15	2.9	14	88	3	55	58	0	2	39	1.11
161526--161559	2	17.0	2	100	0	68	50	0	0	50	1.00
166717--166770	20	2.7	20	97	0	99	29	12	24	33	1.92
166816--166854	21	1.9	21	89	5	62	35	15	12	35	1.86

Tables:   1

The End!