genome.fa.s4548.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004548.1 Hibiscus syriacus cultivar Beakdansim tig00010099_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65968

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14479--14503	13	1.9	13	100	0	50	68	16	8	8	1.38
24660--24738	21	3.7	21	69	12	52	29	32	17	20	1.95
26642--26681	20	2.0	20	85	5	53	22	0	20	57	1.41
34058--34096	21	1.9	20	85	15	53	56	2	7	33	1.41
35285--35360	23	3.3	23	94	1	125	53	15	21	9	1.69
38596--38640	21	2.1	22	87	4	65	28	6	0	64	1.19
38705--38842	50	2.7	51	82	6	172	37	21	12	28	1.89
44647--45110	39	12.0	39	88	3	598	36	15	18	30	1.91
45149--45387	36	6.8	36	78	10	253	36	12	22	28	1.90
45044--45336	101	2.9	101	89	1	408	37	12	19	29	1.89
45185--45308	65	1.9	65	85	3	169	37	12	20	30	1.89
45321--45435	51	2.3	51	87	0	158	33	12	24	29	1.91
45372--45815	36	12.4	36	85	6	587	35	13	25	25	1.92
45339--45438	51	2.0	51	91	0	164	35	13	25	27	1.92
45269--45872	123	4.5	126	79	14	506	36	13	24	25	1.92
45643--45879	57	4.3	57	87	6	360	38	13	24	24	1.91
45897--46009	36	3.1	36	82	3	111	30	14	18	36	1.90
47154--47183	13	2.2	14	94	5	53	0	13	3	83	0.77
48424--48459	14	2.5	14	90	4	54	55	13	16	13	1.69
48418--48459	22	2.0	22	90	4	68	52	14	16	16	1.75
48424--48463	8	5.4	8	80	14	50	55	12	17	15	1.70
52554--52593	17	2.3	18	82	8	55	62	2	0	35	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57334--57370	17	2.2	17	90	0	56	40	13	35	10	1.80
59405--59439	2	17.5	2	87	0	52	48	45	2	2	1.32
59858--60783	226	4.1	226	90	2	1450	31	16	14	36	1.90
61364--61431	3	23.0	3	96	3	129	66	0	0	33	0.92
65085--65160	20	3.8	20	87	3	100	30	10	22	36	1.88

Tables:   1

The End!