genome.fa.s4549.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004549.1 Hibiscus syriacus cultivar Beakdansim tig00010100_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125670

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6153--6242	16	5.2	17	93	6	139	12	24	44	18	1.84
6153--6242	33	2.6	34	89	10	139	12	24	44	18	1.84
12059--12767	353	2.0	355	96	3	1331	31	17	14	36	1.90
14798--14851	5	10.8	5	95	0	81	5	40	38	14	1.70
14849--14939	6	15.2	6	100	0	182	0	16	49	34	1.46
15015--15090	40	1.9	40	100	0	152	42	13	19	25	1.87
20281--20319	5	7.8	5	94	0	51	7	41	38	12	1.72
20317--20389	6	12.2	6	97	0	128	2	16	49	31	1.60
20664--20718	22	2.5	22	75	0	56	29	9	23	38	1.85
22969--23016	15	3.2	15	84	0	69	8	12	66	12	1.44
40893--40947	26	2.1	26	89	0	83	29	9	16	45	1.78
44529--44588	29	2.0	29	87	6	84	41	15	6	36	1.73
44712--44745	15	2.2	16	89	5	52	52	0	0	47	1.00
44963--45031	23	2.9	24	80	6	68	49	0	1	49	1.09
58492--58538	3	15.7	3	95	0	85	29	0	2	68	1.02
63851--63948	49	2.0	50	84	6	128	39	16	12	31	1.85
65084--65112	12	2.3	13	94	5	51	51	0	0	48	1.00
66379--66414	2	18.0	2	100	0	72	50	0	0	50	1.00
66963--66995	2	16.5	2	100	0	66	51	0	0	48	1.00
67314--67357	19	2.3	19	84	7	54	36	13	13	36	1.85
77332--77386	13	4.2	13	75	13	58	49	12	3	34	1.59
77372--77470	33	3.0	33	94	1	164	45	15	7	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77465--77504	21	1.9	21	94	0	71	47	7	15	30	1.72
80607--80692	39	2.3	39	85	4	122	39	10	2	47	1.51
86919--86956	20	1.9	20	88	0	58	21	26	10	42	1.85
87029--87103	30	2.5	30	97	0	141	32	9	5	53	1.55
89056--89270	20	10.6	20	76	7	139	39	24	18	18	1.92
89056--89265	40	5.2	40	84	6	237	39	24	17	18	1.92
90178--90213	14	2.6	14	95	0	63	41	22	25	11	1.86
90245--90351	20	6.1	19	71	23	99	14	22	17	45	1.84
90250--90346	34	2.9	34	98	1	187	14	22	18	44	1.86
90250--90379	67	1.9	68	84	7	176	14	21	20	43	1.88
90481--90517	14	2.6	14	86	0	56	48	21	0	29	1.50
91889--91981	42	2.2	42	80	3	107	22	17	39	20	1.92
92461--92527	20	3.3	20	82	0	80	35	20	17	25	1.95
92563--92605	19	2.3	19	79	0	50	11	16	27	44	1.82
92571--92623	19	2.8	19	94	0	88	5	15	30	49	1.67
92711--93090	94	4.1	94	93	1	611	47	18	11	22	1.80
93810--93872	31	2.0	31	100	0	126	22	12	19	46	1.83
94881--95002	20	6.5	19	73	13	83	10	18	22	48	1.79
94928--94987	21	2.9	21	78	9	70	10	20	21	48	1.78
95565--95774	20	10.4	20	78	7	226	19	18	24	38	1.93
95565--95835	81	3.3	82	85	5	329	18	17	24	39	1.92
95565--95774	41	5.2	41	92	1	334	19	18	24	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95565--95835	40	6.7	41	84	7	297	18	17	24	39	1.92
95787--95835	20	2.5	20	90	6	73	14	16	24	44	1.84
95864--95938	20	3.7	19	73	8	60	18	20	26	34	1.95
97091--97136	2	23.0	2	100	0	92	50	0	0	50	1.00
97631--97684	22	2.5	22	100	0	108	44	0	3	51	1.19
103079--103137	21	2.8	21	76	5	57	52	16	5	25	1.64
106781--107015	41	5.7	40	77	8	204	34	19	16	29	1.94
106813--107015	84	2.5	82	80	6	221	34	18	16	30	1.93
107863--107900	13	2.8	14	88	8	60	28	7	7	55	1.57
110937--110963	2	13.5	2	100	0	54	48	0	0	51	1.00
111004--111042	2	20.0	2	84	5	53	56	0	0	43	0.99
111095--111121	14	1.9	14	100	0	54	44	0	0	55	0.99
113212--113267	19	3.1	19	80	19	66	71	5	0	23	1.06
114986--115031	23	2.0	23	83	8	58	34	0	8	56	1.30
116143--116265	4	30.8	4	100	0	246	49	0	25	25	1.50
117976--118019	23	1.9	23	100	0	88	31	9	25	34	1.87
124905--124946	20	2.0	21	95	4	77	52	9	0	38	1.34

Tables:   1

The End!