genome.fa.s455.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000455.1 Hibiscus syriacus cultivar Beakdansim tig00000844_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78000

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1671--1717	19	2.5	19	96	0	85	31	2	10	55	1.46
2236--2267	16	2.0	16	100	0	64	43	18	18	18	1.88
2067--2957	198	4.4	214	77	13	659	37	14	16	31	1.89
2252--2985	198	3.7	196	84	4	922	37	14	16	31	1.89
2866--3132	147	1.8	148	85	0	383	36	14	16	32	1.89
4659--4697	12	3.2	12	85	0	51	38	2	28	30	1.70
5982--6042	30	2.0	30	83	0	77	31	1	13	54	1.49
7375--8330	200	4.9	198	84	4	1168	37	13	16	32	1.88
11485--12200	199	3.6	197	84	5	865	39	14	14	30	1.87
17693--17742	26	1.9	26	100	0	100	28	12	28	32	1.92
19431--19904	112	4.2	113	89	2	731	32	11	12	43	1.79
19431--19904	225	2.1	224	89	1	725	32	11	12	43	1.79
20173--20326	76	2.0	76	91	0	245	31	14	10	43	1.79
20738--20933	92	2.1	92	88	4	288	32	11	11	44	1.76
20833--21348	112	4.6	113	92	2	828	31	11	13	43	1.79
21311--21351	21	2.1	19	86	13	57	41	9	9	39	1.71
21543--21592	23	2.2	23	92	0	82	34	14	12	40	1.82
21527--21871	87	4.0	87	94	0	591	31	13	11	43	1.80
21629--21673	23	2.0	23	90	0	72	37	17	11	33	1.85
21707--21757	23	2.2	23	89	0	75	35	21	5	37	1.78
21794--21844	23	2.2	23	89	0	75	33	19	9	37	1.85
21904--21948	16	2.8	16	82	0	63	31	24	8	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24080--24276	104	1.9	104	81	6	238	47	18	18	16	1.83
25095--25165	35	2.0	36	97	2	135	16	30	32	19	1.95
25592--25666	23	3.3	22	70	15	71	40	8	20	32	1.81
25574--25678	46	2.3	46	95	1	185	42	6	18	32	1.76
25856--25955	17	5.6	17	81	9	119	19	25	32	24	1.98
25827--25956	38	3.5	38	85	6	178	23	23	30	23	1.99
25835--25903	21	3.5	21	70	22	67	24	27	26	21	1.99
26110--26151	20	2.0	21	90	4	68	42	7	9	40	1.65
31285--31326	20	2.0	21	90	4	68	42	7	9	40	1.65
42481--42529	23	2.1	23	85	7	64	57	14	2	26	1.48
52201--52249	23	2.1	23	85	7	64	57	14	2	26	1.48
59832--59882	18	2.7	20	75	6	52	39	0	0	60	0.97
60337--60387	15	3.4	15	86	0	75	39	5	17	37	1.74
60405--60445	14	2.9	14	85	0	55	31	12	17	39	1.86
60667--60717	23	2.2	23	82	0	57	45	1	1	50	1.24
60729--60785	28	2.3	26	80	19	68	52	1	0	45	1.11
60806--60856	23	2.2	23	89	0	75	43	1	0	54	1.11
60853--60908	22	2.7	20	78	13	58	55	1	0	42	1.10
61122--61211	42	2.1	42	84	8	112	55	13	6	24	1.62
62648--62732	36	2.4	36	93	0	143	18	42	14	24	1.88
62661--62745	36	2.5	34	86	5	118	20	40	16	23	1.91
64701--64754	18	3.0	18	83	0	81	40	22	18	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71369--71409	21	2.0	21	90	0	64	36	4	9	48	1.58
72036--72068	2	16.5	2	100	0	66	51	0	0	48	1.00
72105--72145	13	3.2	13	79	6	57	63	0	2	34	1.08
72106--72155	25	2.2	23	82	13	59	66	0	2	32	1.03

Tables:   1

The End!