genome.fa.s4551.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004551.1 Hibiscus syriacus cultivar Beakdansim tig00010106_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74396

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1914--1988	28	2.7	28	81	2	89	46	8	6	38	1.60
2140--2221	22	3.7	22	81	0	101	28	15	36	19	1.93
6550--6588	20	2.0	20	100	0	78	23	10	30	35	1.88
8296--8335	21	1.9	21	84	0	53	37	7	0	55	1.29
8350--8414	30	2.2	30	88	5	96	32	13	4	49	1.63
13616--13656	14	2.9	14	85	0	55	24	29	21	24	1.99
19330--19430	3	31.7	3	70	13	60	55	3	2	37	1.34
19338--19382	16	2.5	17	82	17	56	55	4	2	37	1.32
19356--19427	16	4.4	16	72	10	56	54	4	2	38	1.34
19670--19707	16	2.3	17	86	4	51	31	0	0	68	0.90
19715--19767	27	2.1	25	86	10	72	37	5	0	56	1.23
19715--19771	26	2.1	27	84	9	73	38	5	0	56	1.22
19730--19777	25	1.9	25	83	8	62	39	8	0	52	1.32
20872--20921	26	1.9	26	84	8	66	36	4	10	50	1.55
21484--21521	18	2.1	18	90	0	58	31	0	18	50	1.47
21713--21750	18	2.1	18	90	0	58	31	0	18	50	1.47
21444--21903	229	2.0	229	98	0	893	31	10	14	44	1.78
23720--24553	419	2.0	418	88	0	1256	35	21	12	29	1.91
28235--28712	46	10.4	46	89	0	688	42	14	20	22	1.88
30890--31422	244	2.2	243	89	1	798	27	20	12	39	1.88
30890--31422	81	6.6	81	88	0	787	27	20	12	39	1.88
31774--31901	59	2.2	58	87	2	186	34	21	11	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32364--32409	19	2.4	19	85	0	65	23	34	15	26	1.94
39040--39078	20	2.0	20	89	0	60	23	12	10	53	1.69
45306--45595	81	3.6	81	86	0	409	27	22	12	38	1.89
45306--45637	81	4.1	81	84	0	403	28	21	12	37	1.89
46326--46552	95	2.4	96	83	6	257	26	23	13	36	1.92
47790--48059	46	5.9	46	82	1	308	24	21	12	41	1.87
47784--48057	92	3.0	92	87	0	368	24	21	12	41	1.87
48067--48599	81	6.6	81	90	0	814	31	20	10	36	1.88
61960--62002	21	2.0	21	86	0	59	23	18	18	39	1.92
63537--63582	20	2.3	19	85	14	58	50	8	15	26	1.73

Tables:   1

The End!