Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004552.1 Hibiscus syriacus cultivar Beakdansim tig00010110_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86975

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2450--2501
22
2.4
22
81
9
61
57
1
9
30
1.42
4858--5104
97
2.5
96
80
10
275
38
14
17
29
1.88
5020--5172
66
2.4
61
79
11
155
39
13
13
32
1.84
5048--5172
67
1.9
64
85
9
173
40
13
12
33
1.83
6346--6438
15
6.8
13
73
17
64
2
17
4
76
1.05
6371--6479
15
7.1
15
75
10
94
3
16
4
75
1.12
6350--6479
48
2.8
48
71
23
125
3
16
4
74
1.13
6383--6475
33
2.9
32
76
23
81
4
17
4
74
1.15
6337--6479
29
4.8
29
75
16
123
4
16
4
74
1.14
7875--7907
13
2.5
13
100
0
66
6
33
21
39
1.78
10166--10257
40
2.3
40
100
0
184
28
18
36
16
1.92
10166--10261
20
4.8
20
92
0
156
28
19
36
15
1.93
10280--10331
17
2.9
18
94
5
88
23
21
32
23
1.98
13686--13773
19
4.8
19
77
14
87
23
19
32
23
1.97
14449--14498
21
2.3
21
80
10
57
62
0
6
32
1.20
16223--16266
3
14.7
3
95
0
79
63
0
0
36
0.95
19282--19318
19
1.9
19
94
0
65
2
35
21
40
1.68
28458--28497
18
2.2
19
86
4
55
65
0
2
32
1.06
33597--33829
59
3.9
59
89
2
351
34
12
21
31
1.90
34806--34846
16
2.6
16
88
0
55
24
14
31
29
1.95
40409--40580
59
2.9
59
91
0
263
35
12
19
32
1.89
43380--43417
12
3.2
12
85
7
60
57
0
0
42
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46412--46452
8
5.2
8
82
5
57
34
0
29
36
1.58
46520--47252
126
5.8
126
98
0
1403
22
25
19
32
1.97
47635--47733
33
3.0
34
81
11
132
39
4
4
52
1.39
48258--48360
21
4.9
21
91
3
154
21
24
35
18
1.95
48258--48390
63
2.1
63
80
8
146
21
22
36
19
1.95
48370--48417
21
2.3
21
85
0
60
22
12
39
25
1.89
50130--50207
33
2.4
31
85
10
95
60
1
0
38
1.05
50135--50240
34
3.1
33
79
14
85
61
3
0
34
1.14
51775--51804
15
2.0
15
100
0
60
13
26
46
13
1.80
59365--59443
41
1.9
41
82
5
97
35
18
16
29
1.93
59398--59712
83
3.8
83
77
5
287
32
16
17
33
1.92
59394--59700
165
1.9
166
80
2
366
33
17
16
32
1.93
65526--65574
25
2.0
24
84
4
62
46
0
6
46
1.27
68931--68988
21
2.8
19
85
12
71
20
6
27
44
1.77
72590--72626
19
1.9
19
94
0
65
45
10
0
43
1.39
75609--75779
46
3.8
46
93
2
285
37
7
23
31
1.83

Tables:   1

The End!