Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004553.1 Hibiscus syriacus cultivar Beakdansim tig00010112_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66910

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2153--2311
64
2.5
63
81
5
185
28
18
22
30
1.97
5494--5550
17
3.6
16
77
15
57
15
19
0
64
1.28
6261--6649
45
8.7
45
86
5
540
24
22
10
42
1.85
7394--7451
31
1.9
31
82
6
75
17
17
10
55
1.69
9469--9544
8
9.0
8
72
15
55
77
1
15
5
1.01
9450--9517
27
2.5
28
79
13
86
73
0
19
7
1.06
9468--9560
18
5.4
16
72
20
55
76
1
17
5
1.03
9478--9553
22
3.6
20
75
10
55
77
1
14
6
1.03
9473--9562
43
2.1
42
80
10
103
76
1
16
5
1.03
10978--11088
36
3.1
36
72
2
114
35
18
8
37
1.81
11149--11412
36
7.2
36
65
12
133
28
20
12
37
1.90
10977--11440
73
6.3
72
82
6
382
31
19
12
37
1.88
11714--12105
117
3.3
118
86
1
527
38
14
21
25
1.92
13660--13691
15
2.2
15
94
5
57
18
3
6
71
1.20
15956--16021
31
2.2
30
81
10
80
50
9
6
34
1.59
16012--16054
16
2.7
16
82
10
61
55
6
2
34
1.39
16338--16396
21
2.9
21
80
5
68
44
3
11
40
1.58
16457--16574
13
8.9
14
71
17
60
56
3
2
37
1.29
16928--17151
117
1.9
117
83
3
290
28
20
12
37
1.89
19275--19452
90
2.0
90
94
0
311
44
6
10
37
1.66
24981--25155
90
2.0
89
91
1
287
45
6
10
37
1.64
30875--30910
16
2.2
16
90
0
54
13
5
0
80
0.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39949--40003
13
4.2
13
85
0
74
25
18
18
38
1.93
39975--40140
85
2.0
84
80
7
192
30
21
18
29
1.97
40160--40184
2
12.5
2
100
0
50
48
0
0
52
1.00
60406--60565
61
2.6
61
83
2
196
27
20
26
25
1.99
64982--65019
19
2.1
17
90
9
58
2
39
0
57
1.12

Tables:   1

The End!