Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004556.1 Hibiscus syriacus cultivar Beakdansim tig00010118_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 69173
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Found at i:3013 original size:90 final size:90
Alignment explanation
Indices: 2892--3067 Score: 298
Period size: 90 Copynumber: 2.0 Consensus size: 90
2882 TAATCCCGAA
* * * *
2892 TATTTAATTTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTAATATGAT
1 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTAAAATAATAAAAACCCTAATATGAT
2957 TAGGATAACTTGGATATAAAAGGAT
66 TAGGATAACTTGGATATAAAAGGAT
2982 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTAAAATAATAAAAACCCTAATATGAT
1 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTAAAATAATAAAAACCCTAATATGAT
* *
3047 TAGGGTAACTTGGCTATAAAA
66 TAGGATAACTTGGATATAAAA
3068 AGGGTGTGTT
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
90 80 1.00
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.38
Consensus pattern (90 bp):
TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTAAAATAATAAAAACCCTAATATGAT
TAGGATAACTTGGATATAAAAGGAT
Found at i:14753 original size:20 final size:21
Alignment explanation
Indices: 14715--14753 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
14705 GCTTGTGGTC
*
14715 TTTGTTGAAGCCATGAAATCT
1 TTTGTCGAAGCCATGAAATCT
*
14736 TTTGTCGAATCCAT-AAAT
1 TTTGTCGAAGCCATGAAAT
14754 TCCTGTAATG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (21 bp):
TTTGTCGAAGCCATGAAATCT
Found at i:30580 original size:55 final size:55
Alignment explanation
Indices: 30516--30955 Score: 603
Period size: 55 Copynumber: 8.0 Consensus size: 55
30506 ATTACCAAAT
**
30516 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTTTGTATG
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* * *
30571 GGCACTGTGTGTACAAAACTAAGAAATTCATAATGAGTTTATGAATTTCTGTATG
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* ** *
30626 GGCATTGTGTGTAAAAAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATG
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* * * *
30681 GGCACTATGTGTGCAAAACTAAGAGATTCATAATAAGTTTGTGGATTTCCGTATG
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* * * *
30736 GGCACTATGTGTGCAAAACTTAGAAAATCATAATAAGTTTATGAATTTCCGTATT
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* *
30791 GGCATTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCATATG
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* ** * * ** *
30846 GGCATTTTGTGTGTGCAAGTCTAAGAAATTCACAATGAGTTTATGAATTTATGTATT
1 GGCA--CTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
*
30903 GGCACTGTGTGTGC-AAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTAT
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTAT
30956 TGGTAGTGGG
Statistics
Matches: 340, Mismatches: 43, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
54 33 0.10
55 260 0.76
57 47 0.14
ACGTcount: A:0.34, C:0.10, G:0.20, T:0.36
Consensus pattern (55 bp):
GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
Found at i:32205 original size:3 final size:3
Alignment explanation
Indices: 32197--32235 Score: 62
Period size: 3 Copynumber: 13.3 Consensus size: 3
32187 AATTAAAATA
*
32197 AAT AAT AAT AAT AAT AA- AAT AAC AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
32236 TTAAAAAGAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:32225 original size:20 final size:21
Alignment explanation
Indices: 32190--32233 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
32180 TGTAAAAAAT
*
32190 TAAAATAAATAATAATAATAA
1 TAAAATAAACAATAATAATAA
32211 TAAAAT-AACAATAATAATAA
1 TAAAATAAACAATAATAATAA
32231 TAA
1 TAA
32234 TATTAAAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 16 0.73
21 6 0.27
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.27
Consensus pattern (21 bp):
TAAAATAAACAATAATAATAA
Found at i:32227 original size:23 final size:21
Alignment explanation
Indices: 32190--32235 Score: 74
Period size: 23 Copynumber: 2.1 Consensus size: 21
32180 TGTAAAAAAT
32190 TAAAATAAATAATAATAATAA
1 TAAAATAAATAATAATAATAA
32211 TAAAATAACAATAATAATAATAA
1 TAAAAT-A-AATAATAATAATAA
32234 TA
1 TA
32236 TTAAAAAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 6 0.26
22 1 0.04
23 16 0.70
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (21 bp):
TAAAATAAATAATAATAATAA
Found at i:36790 original size:30 final size:30
Alignment explanation
Indices: 36756--36816 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
36746 ACTATTTCTC
* *
36756 CAAAATTT-CTAAATTGGTCCCCCAACTTTT
1 CAAAATTTAC-AAAATGGTCCCCAAACTTTT
*
36786 CAAAATTTACAAAATGGTCCCCAAATTTTT
1 CAAAATTTACAAAATGGTCCCCAAACTTTT
36816 C
1 C
36817 TAAGGCTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.34, C:0.25, G:0.07, T:0.34
Consensus pattern (30 bp):
CAAAATTTACAAAATGGTCCCCAAACTTTT
Found at i:38229 original size:130 final size:133
Alignment explanation
Indices: 37990--38293 Score: 418
Period size: 130 Copynumber: 2.3 Consensus size: 133
37980 GGGGTGTCAC
**
37990 ATCTGGTCGGTGGATGACAATGTTCCTACGTGATGAGGATGTATTGGCCATCTTTAAGGATGATG
1 ATCTGGTCGGTGGATGACACGGTTCCTACGTGATGAGGATGTATTGGCCATCTTTAAGGA-GATG
* * * *** *
38055 ATAACACGGTTCCTACGTGATGAGGACAGTTGGTTATCTAGGGTGGCATGGCTCCTACGTGATGA
65 ATAACACGGTTCCTACGTGATGAGGACAGCTAGTTATCTAGGGTGACACAACTCCTACATGATGA
*
38120 GGAT
130 GGAG
38124 ATCTGGTCGGTGGATGACACGGTTCCTACGTGATGAGGATG-ATAT-GCCATCTTTAAGGA-A-G
1 ATCTGGTCGGTGGATGACACGGTTCCTACGTGATGAGGATGTAT-TGGCCATCTTTAAGGAGATG
* **
38185 ATAACATGGTTCCTACGTGATGAGGATGGCTAGTTATCTAGGGTGACACAACTCCTACATGATGA
65 ATAACACGGTTCCTACGTGATGAGGACAGCTAGTTATCTAGGGTGACACAACTCCTACATGATGA
38250 GGAG
130 GGAG
* * *
38254 GTCTGGTCGGTGGATGACACGATTCCTACGCGATGAGGAT
1 ATCTGGTCGGTGGATGACACGGTTCCTACGTGATGAGGAT
38294 AGCTAGCCAT
Statistics
Matches: 153, Mismatches: 16, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
130 96 0.63
131 1 0.01
133 16 0.10
134 40 0.26
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (133 bp):
ATCTGGTCGGTGGATGACACGGTTCCTACGTGATGAGGATGTATTGGCCATCTTTAAGGAGATGA
TAACACGGTTCCTACGTGATGAGGACAGCTAGTTATCTAGGGTGACACAACTCCTACATGATGAG
GAG
Found at i:38491 original size:66 final size:66
Alignment explanation
Indices: 38318--38492 Score: 255
Period size: 66 Copynumber: 2.6 Consensus size: 66
38308 AGGGATAATG
*
38318 GTTTCAAGAGAAACCGTCTCAAGAGAGACAAAATTTGTTTC-AAGTGAAACGATCTCAAAGATGG
1 GTTTCAAGAGAAACCGTCTCAAGAGAGACAAAA-TTGTTTCAAAGTAAAACGATCTCAAAGATGG
38382 GT
65 GT
* *
38384 GTTTCAAGAGAAACCGTCTCAAGAGAGACAAAATTCATTTCAAAG-AAAACGATCTCAAAGATTG
1 GTTTCAAGAGAAACCGTCTCAAGAGAGACAAAATT-GTTTCAAAGTAAAACGATCTCAAAGATGG
38448 GT
65 GT
** *
38450 GTTTCAAGAGAAATTGTCTCAAGGGAGACAAAACTTGTTTCAA
1 GTTTCAAGAGAAACCGTCTCAAGAGAGACAAAA-TTGTTTCAA
38493 GGGAGACAAA
Statistics
Matches: 99, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
65 2 0.02
66 92 0.93
67 5 0.05
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.25
Consensus pattern (66 bp):
GTTTCAAGAGAAACCGTCTCAAGAGAGACAAAATTGTTTCAAAGTAAAACGATCTCAAAGATGGG
T
Found at i:38492 original size:21 final size:21
Alignment explanation
Indices: 38463--38522 Score: 93
Period size: 21 Copynumber: 2.9 Consensus size: 21
38453 TCAAGAGAAA
*
38463 TTGTCTCAAGGGAGACAAAAC
1 TTGTTTCAAGGGAGACAAAAC
38484 TTGTTTCAAGGGAGACAAAAC
1 TTGTTTCAAGGGAGACAAAAC
* *
38505 ATGTTTCAAGGGAAACAA
1 TTGTTTCAAGGGAGACAA
38523 TCTCAAAGGT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (21 bp):
TTGTTTCAAGGGAGACAAAAC
Found at i:38555 original size:87 final size:87
Alignment explanation
Indices: 38421--38583 Score: 238
Period size: 87 Copynumber: 1.9 Consensus size: 87
38411 ACAAAATTCA
* * *
38421 TTTCAAAGAAAACGATCTCAAAGATTGGTGTTTCAAGAGAAATTGTCTCAAGGGAGACAAAACTT
1 TTTCAAAGAAAACAATCTCAAAGATTGGTGTTGCAAGAGAAACTGTCTCAAGGGAGACAAAA-TT
38486 -GTTTCAAGGGAGACAAAACATG
65 CGTTTCAAGGGAGACAAAACATG
* * * * *
38508 TTTCAAGGGAAACAATCTCAAAGGTTGGTGTTGCACGATAAACTGTCTCAAGGGAGACAAAATTC
1 TTTCAAAGAAAACAATCTCAAAGATTGGTGTTGCAAGAGAAACTGTCTCAAGGGAGACAAAATTC
38573 GTTTCAAGGGA
66 GTTTCAAGGGA
38584 AATGATCTCA
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
86 2 0.03
87 65 0.97
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.25
Consensus pattern (87 bp):
TTTCAAAGAAAACAATCTCAAAGATTGGTGTTGCAAGAGAAACTGTCTCAAGGGAGACAAAATTC
GTTTCAAGGGAGACAAAACATG
Found at i:39950 original size:8 final size:8
Alignment explanation
Indices: 39937--39980 Score: 58
Period size: 8 Copynumber: 5.9 Consensus size: 8
39927 TTTTATTTCT
39937 TTCTTTTG
1 TTCTTTTG
39945 TTCTTTTG
1 TTCTTTTG
39953 TTC-TTTG
1 TTCTTTTG
39960 TT-TTTT-
1 TTCTTTTG
39966 TTCTTTTG
1 TTCTTTTG
*
39974 CTCTTTT
1 TTCTTTT
39981 TCTTTGCTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
6 2 0.06
7 13 0.41
8 17 0.53
ACGTcount: A:0.00, C:0.14, G:0.09, T:0.77
Consensus pattern (8 bp):
TTCTTTTG
Found at i:39964 original size:21 final size:21
Alignment explanation
Indices: 39940--39979 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
39930 TATTTCTTTC
*
39940 TTTTGTTCTTTTGTTCTTTGT
1 TTTTGTTCTTTTGCTCTTTGT
*
39961 TTTTTTTCTTTTGCTCTTT
1 TTTTGTTCTTTTGCTCTTT
39980 TTCTTTGCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.00, C:0.12, G:0.10, T:0.78
Consensus pattern (21 bp):
TTTTGTTCTTTTGCTCTTTGT
Found at i:44719 original size:3 final size:3
Alignment explanation
Indices: 44711--44745 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
44701 AATTATAAGA
* *
44711 AAT AAT AAT AAT AAT AAC GAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
44746 AATTTAAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:44809 original size:18 final size:19
Alignment explanation
Indices: 44786--44832 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 19
44776 TGTCTATAGT
44786 TAGTATTAAATAAAT-TTA
1 TAGTATTAAATAAATATTA
44804 TAGTA-TAAATAAATATTA
1 TAGTATTAAATAAATATTA
* *
44822 CAATATTAAAT
1 TAGTATTAAAT
44833 TATATTTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 9 0.36
18 11 0.44
19 5 0.20
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.40
Consensus pattern (19 bp):
TAGTATTAAATAAATATTA
Found at i:45321 original size:17 final size:17
Alignment explanation
Indices: 45299--45333 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
45289 CTTCATGTAT
45299 TGCCCAAGCTACTGACC
1 TGCCCAAGCTACTGACC
45316 TGCCCAAGCTACTGACC
1 TGCCCAAGCTACTGACC
45333 T
1 T
45334 ACCAATGGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.40, G:0.17, T:0.20
Consensus pattern (17 bp):
TGCCCAAGCTACTGACC
Found at i:58501 original size:15 final size:15
Alignment explanation
Indices: 58483--58513 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
58473 AGGAGTATGA
*
58483 GGAGGAGGTGGAGGT
1 GGAGGAGGAGGAGGT
58498 GGAGGAGGAGGAGGT
1 GGAGGAGGAGGAGGT
58513 G
1 G
58514 CTGCTACGGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.68, T:0.10
Consensus pattern (15 bp):
GGAGGAGGAGGAGGT
Found at i:60119 original size:26 final size:27
Alignment explanation
Indices: 60088--60149 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 27
60078 CATAAATAAG
*
60088 AAATAAATCT-TACTT-TTAAAATAATT
1 AAATAAAT-TGTACTTATCAAAATAATT
*
60114 AAATAAATTGTACTTGATCATAATAATT
1 AAATAAATTGTACTT-ATCAAAATAATT
60142 AAATAAAT
1 AAATAAAT
60150 AAATTACACT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 1 0.03
26 13 0.42
28 17 0.55
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (27 bp):
AAATAAATTGTACTTATCAAAATAATT
Found at i:62084 original size:29 final size:30
Alignment explanation
Indices: 62046--62108 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 30
62036 TTTTTGGTCC
* *
62046 CTAAACCTTTCAAAATTTATACTTTAGCCA
1 CTAAACCTTTCAAAACTTACACTTTAGCCA
* *
62076 CTAAA-CTTTCAAAACTTACATTTTAGTCA
1 CTAAACCTTTCAAAACTTACACTTTAGCCA
62105 CTAA
1 CTAA
62109 CCAAGATTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 24 0.83
30 5 0.17
ACGTcount: A:0.38, C:0.22, G:0.03, T:0.37
Consensus pattern (30 bp):
CTAAACCTTTCAAAACTTACACTTTAGCCA
Found at i:64441 original size:18 final size:18
Alignment explanation
Indices: 64407--64440 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
64397 TATGCCTCTA
*
64407 CATCTCAAGATCATTTTG
1 CATCTCAAGACCATTTTG
64425 CATCTCAAG-CCATTTT
1 CATCTCAAGACCATTTT
64441 TATTTTTGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.26, C:0.26, G:0.09, T:0.38
Consensus pattern (18 bp):
CATCTCAAGACCATTTTG
Found at i:64791 original size:13 final size:15
Alignment explanation
Indices: 64770--64830 Score: 58
Period size: 15 Copynumber: 4.2 Consensus size: 15
64760 ACTCTTTTAA
*
64770 TATTATTTTT-AT-T
1 TATTTTTTTTAATAT
64783 TATTTTTTTTAATAT
1 TATTTTTTTTAATAT
*
64798 TATTTTTTAATAA-AT
1 TATTTTTT-TTAATAT
64813 ATATTTTTTTTAA-AT
1 -TATTTTTTTTAATAT
64828 TAT
1 TAT
64831 AGTCGAAGAA
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
13 9 0.22
14 5 0.12
15 16 0.39
16 11 0.27
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
TATTTTTTTTAATAT
Found at i:64802 original size:15 final size:14
Alignment explanation
Indices: 64782--64830 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 14
64772 TTATTTTTAT
64782 TTATTTTTTTTAATA
1 TTATTTTTTTTAA-A
*
64797 TTATTTTTTAATAAA
1 TTATTTTTT-TTAAA
64812 TATATTTTTTTTAAA
1 T-TATTTTTTTTAAA
64827 TTAT
1 TTAT
64831 AGTCGAAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
14 3 0.10
15 16 0.53
16 11 0.37
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
TTATTTTTTTTAAA
Found at i:64831 original size:16 final size:16
Alignment explanation
Indices: 64783--64831 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
64773 TATTTTTATT
64783 TATTTTTTTTAATATTA
1 TATTTTTTTTAA-ATTA
**
64800 T-TTTTTAATAAA-TA
1 TATTTTTTTTAAATTA
64814 TATTTTTTTTAAATTA
1 TATTTTTTTTAAATTA
64830 TA
1 TA
64832 GTCGAAGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
14 3 0.12
15 10 0.38
16 12 0.46
17 1 0.04
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TATTTTTTTTAAATTA
Found at i:67225 original size:3 final size:3
Alignment explanation
Indices: 67210--67256 Score: 69
Period size: 3 Copynumber: 15.7 Consensus size: 3
67200 TCTATCAAAA
*
67210 TAT TAT TAG TAT TAT TAT TAT TAT TAT TAAT TA- TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT
67255 TA
1 TA
67257 CATTTTACAG
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
2 2 0.05
3 35 0.88
4 3 0.08
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (3 bp):
TAT
Done.