genome.fa.s4557.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004557.1 Hibiscus syriacus cultivar Beakdansim tig00010127_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  145868

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5104--5158	21	2.7	19	84	15	74	23	25	16	34	1.95
6490--6545	2	28.5	2	96	3	105	50	0	0	50	1.00
8452--8490	3	13.7	3	89	10	64	33	0	0	66	0.92
8764--8798	18	2.0	18	88	5	54	14	42	25	17	1.86
10259--10296	5	7.6	5	82	11	51	18	0	2	78	0.86
10489--10533	2	22.5	2	100	0	90	51	0	0	48	1.00
13504--13564	20	3.0	20	95	0	104	26	21	16	36	1.94
14160--14245	14	5.7	14	74	16	66	76	6	15	1	1.05
14168--14244	11	6.6	12	76	20	58	76	6	15	1	1.05
14208--14245	13	2.8	14	92	4	60	86	2	10	0	0.66
15089--15145	23	2.4	23	77	8	62	36	10	5	47	1.61
15776--16092	36	8.9	36	71	15	144	31	17	13	37	1.88
15781--15917	71	1.9	71	82	5	168	29	17	15	37	1.90
15981--16090	36	3.1	36	85	1	159	32	18	12	36	1.88
16107--16168	30	2.0	30	81	6	70	29	17	16	37	1.92
16128--16186	31	1.9	31	93	3	102	28	13	13	44	1.82
16250--16435	64	2.9	64	83	3	230	31	9	16	42	1.80
16606--16890	66	4.5	66	68	16	170	31	16	11	40	1.85
16885--16945	31	1.9	31	83	9	79	32	13	11	42	1.79
17231--17337	36	2.9	37	78	10	110	35	14	12	38	1.83
17488--17568	28	2.8	28	83	12	92	27	14	13	44	1.83
17505--17568	28	2.3	28	91	5	103	25	10	15	48	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17521--17584	28	2.3	28	86	0	92	28	17	15	39	1.90
17644--17842	43	4.5	42	68	20	129	23	33	19	23	1.97
17737--17812	40	1.9	39	84	7	100	21	38	17	23	1.93
17593--17869	134	2.1	134	90	1	439	25	31	18	23	1.98
23943--24004	23	2.9	21	85	7	81	20	35	25	17	1.95
23945--24030	21	4.1	20	74	14	66	22	34	26	16	1.95
27434--27554	40	3.0	40	75	7	109	24	33	19	23	1.97
27715--27767	3	17.7	3	100	0	106	32	0	0	67	0.91
29511--29577	15	4.5	15	79	9	66	17	4	4	73	1.18
29512--29559	5	9.6	5	86	8	71	18	0	2	79	0.84
29773--29805	2	16.5	2	93	0	57	48	0	3	48	1.17
33211--33242	15	2.0	17	88	11	50	21	6	6	65	1.38
34978--35037	24	2.5	24	86	0	75	30	20	28	21	1.98
36735--36787	22	2.4	22	96	0	97	30	32	26	11	1.91
41480--41578	22	4.5	22	96	0	171	28	32	24	15	1.95
43389--43461	36	2.0	36	100	0	146	19	16	13	50	1.77
47029--47082	23	2.3	23	100	0	108	5	51	16	25	1.66
54678--54722	2	23.0	2	86	13	67	48	0	2	48	1.13
57813--57885	24	3.0	24	88	6	76	35	0	21	42	1.54
57828--57885	24	2.4	24	97	0	107	31	0	22	46	1.52
68374--68416	21	2.0	22	86	13	63	18	25	6	48	1.73
83791--83822	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84646--84681	14	2.6	14	86	4	56	52	0	2	44	1.15
90064--90109	23	2.0	23	100	0	92	47	4	0	47	1.21
92953--93022	2	36.0	2	94	5	126	50	0	0	50	1.00
93610--93929	167	1.9	166	97	2	561	29	15	19	35	1.92
94062--94276	74	2.9	74	80	6	256	21	22	20	35	1.96
94060--94304	74	3.3	74	75	6	237	22	22	19	35	1.96
103589--103753	74	2.2	76	80	7	176	23	19	23	34	1.96
103889--105192	6	217.3	6	97	1	1864	22	0	27	49	1.52
105408--105447	18	2.2	18	95	0	71	37	27	17	17	1.92
112087--112163	34	2.2	36	80	15	92	46	0	0	53	1.00
112087--112172	38	2.3	37	82	7	111	47	0	0	52	1.00
119454--119503	14	3.8	13	82	10	57	56	2	2	40	1.22
119471--119503	2	16.5	2	87	12	50	51	3	0	45	1.16
119551--119636	2	44.0	2	87	9	124	51	1	1	46	1.16

Tables:   1

The End!