genome.fa.s4558.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004558.1 Hibiscus syriacus cultivar Beakdansim tig00010130_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  154116

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8468--8497	12	2.5	12	88	0	51	66	3	23	6	1.30
8670--8698	13	2.1	14	93	6	51	62	3	0	34	1.12
8584--8756	86	2.0	85	83	9	219	56	9	2	31	1.43
10099--10145	18	2.6	18	90	6	69	27	4	0	68	1.08
10207--10256	26	2.0	25	84	11	66	26	4	2	68	1.18
14929--14996	5	13.0	5	80	9	73	17	5	1	75	1.08
14941--14996	21	2.7	21	86	2	87	16	5	1	76	1.05
14928--14998	26	2.7	26	82	2	97	18	7	1	73	1.13
17931--17973	18	2.4	18	92	0	68	20	6	0	72	1.08
26391--26449	2	29.5	2	96	0	109	49	0	0	50	1.00
26583--26624	14	3.0	14	76	10	50	59	0	2	38	1.10
26583--26645	25	2.3	27	84	13	76	63	0	4	31	1.15
26614--26665	20	2.5	20	81	3	59	67	1	5	25	1.23
26832--26891	26	2.4	25	81	10	68	65	3	1	30	1.19
27668--27715	18	2.8	17	81	12	55	8	12	16	62	1.53
27906--28117	76	2.8	77	88	2	293	19	23	32	24	1.98
30690--30752	20	2.9	21	79	9	65	15	25	34	23	1.95
36528--36739	76	2.8	77	86	2	275	20	22	32	24	1.98
37828--37907	3	27.0	3	85	2	108	60	0	1	38	1.05
38109--38269	85	1.9	85	87	2	234	55	12	2	29	1.49
39389--39424	18	2.0	18	88	0	54	66	0	0	33	0.92
39354--39498	73	2.0	73	97	1	274	47	2	5	44	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39460--39497	18	2.1	18	90	0	58	65	0	0	34	0.93
41723--41778	15	3.6	17	79	15	59	67	1	3	26	1.16
41723--41785	3	22.0	3	73	15	53	68	1	3	26	1.14
41727--41785	29	2.1	27	87	9	84	67	1	3	27	1.16
41897--41938	2	21.0	2	100	0	84	50	0	0	50	1.00
43030--43075	3	15.0	3	82	13	58	65	0	0	34	0.93
43030--43075	10	4.3	11	80	20	53	65	0	0	34	0.93
43295--44315	113	9.0	112	84	8	1285	29	18	13	38	1.90
43295--44299	227	4.4	226	89	4	1418	29	19	13	38	1.90
43295--44315	340	3.0	340	86	6	1367	29	18	13	38	1.90
44716--44770	22	2.5	22	85	5	76	36	14	12	36	1.84
47346--47565	114	1.9	114	89	1	343	31	18	15	34	1.92
51718--51807	36	2.5	36	78	7	94	55	10	16	17	1.68
54125--54184	21	2.8	22	85	7	70	70	1	0	28	0.97
54999--55057	3	20.3	3	75	13	52	67	1	3	27	1.16
55007--55068	29	2.2	28	81	16	76	62	3	4	29	1.31
55283--55311	2	14.5	2	100	0	58	48	0	0	51	1.00
56558--56779	42	5.2	42	76	8	198	35	19	19	25	1.95
56560--56764	85	2.4	84	78	6	218	34	19	19	26	1.95
62416--62452	16	2.3	16	100	0	74	59	16	13	10	1.61
69734--69941	65	3.2	63	80	14	210	31	22	18	27	1.97
75271--75367	44	2.2	44	83	7	117	26	24	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75290--75371	23	3.6	23	79	11	98	23	26	25	24	2.00
77948--78155	65	3.2	63	78	12	208	30	24	17	26	1.97
79513--79553	21	2.0	21	85	0	55	41	19	4	34	1.73
80313--80391	35	2.3	35	95	0	140	41	7	16	34	1.77
84349--84382	3	11.3	3	100	0	68	64	0	0	35	0.94
84705--84966	113	2.3	113	95	0	470	28	19	15	36	1.93
84876--85039	73	2.2	73	97	0	310	31	17	18	32	1.94
84763--85114	186	1.9	184	94	2	616	27	18	17	36	1.93
86262--86312	14	3.1	17	75	18	54	58	1	11	27	1.44
86659--86701	16	2.6	17	82	17	63	4	9	0	86	0.71
86666--86702	19	1.9	18	89	10	56	2	13	0	83	0.74
86657--86695	13	3.1	12	85	10	51	2	12	0	84	0.72
90237--90267	9	3.6	9	91	8	55	54	0	22	22	1.44
94049--94080	15	2.1	15	94	0	55	46	9	18	25	1.79
96765--96805	3	13.7	3	94	0	73	63	0	2	34	1.08
97982--98360	5	78.4	5	93	6	667	59	0	0	40	0.97
98382--98408	9	3.0	9	100	0	54	44	0	0	55	0.99
98653--98993	170	2.0	170	97	0	646	49	14	10	24	1.75
109710--109739	14	2.1	14	93	0	51	33	10	0	56	1.32
110759--110824	28	2.4	28	85	9	84	34	4	0	60	1.17
111315--111348	16	2.1	16	100	0	68	23	29	5	41	1.78
112949--112996	14	3.6	14	77	11	55	14	12	14	58	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112949--113008	26	2.3	26	88	0	84	15	13	13	58	1.64
115971--116002	2	16.0	2	93	0	55	46	0	3	50	1.17
116282--116339	27	2.2	25	87	6	80	82	0	13	3	0.79
116302--116345	10	4.4	10	88	5	63	88	0	11	0	0.51
119298--119469	75	2.4	71	90	6	258	31	16	23	28	1.96
120812--120886	22	3.5	22	83	9	100	36	14	13	36	1.85
121642--121835	37	5.3	36	72	5	138	33	18	12	35	1.89
121609--121781	36	4.7	37	75	2	152	32	16	12	38	1.86
121609--121828	73	3.0	73	90	0	341	32	17	12	37	1.87
121850--122336	122	4.0	123	86	4	686	38	15	19	26	1.91
121894--122355	241	1.9	241	85	4	603	39	15	19	25	1.91
122337--122678	137	2.5	137	86	3	447	38	15	19	26	1.92
132189--132225	9	3.8	10	86	13	51	35	0	16	48	1.46
132189--132227	20	2.0	20	94	0	69	35	0	15	48	1.45
134198--134250	22	2.2	26	75	18	62	28	15	3	52	1.59
134522--134547	2	13.0	2	100	0	52	50	0	0	50	1.00
137913--137955	19	2.3	19	91	0	68	34	34	18	11	1.87
145019--145101	22	3.7	22	81	9	96	24	28	26	20	1.99
145035--145100	23	2.9	23	86	2	80	24	25	27	22	2.00
146633--146680	18	2.6	19	83	6	55	45	22	29	2	1.64
146646--146693	18	2.6	17	87	12	69	43	25	31	0	1.55
150456--150495	19	2.1	19	95	0	71	25	35	15	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152923--153536	309	2.0	306	85	5	817	39	19	14	26	1.90
153803--153835	13	2.5	13	85	14	50	27	0	12	60	1.32

Tables:   1

The End!